Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1462 ATGACTCATAACTTCGCAAATAAATTAGGTCAAGGAGGCTTTGGCACTATATATAAAGGAAAACTTCGAAGTGGTCACATTGTAGCTCTAAAAGTGCTAGTCATGTCAAAAGCTAATGGACAAGATTTCATCAATGAGTTTGCAACAATAGGAAGAATTCATCATGTTAAAGTGGTGAGATTGGTAGGGTTTTGTGTACAATGA 204 0.3578 MTHNFANKLGQGGFGTIYKGKLRSGHIVALKVLVMSKANGQDFINEFATIGRIHHVKVVRLVGFCVQ* 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1462 67 SUPERFAMILY Protein kinase-like (PK-like) 5 66 IPR011009 -
Vvi6g1462 67 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 67 IPR045874 GO:0004672
Vvi6g1462 67 Pfam Protein tyrosine and serine/threonine kinase 5 66 IPR001245 GO:0004672|GO:0006468
Vvi6g1462 67 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi6g1462 67 ProSiteProfiles Protein kinase domain profile. 3 67 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1462 67 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1462 Vvi-Chr6 21115583 21115786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1462 1 67 Receptor kinase-like Gene Family AT5G38280 55.882 2.58e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi6g1462 PK_Tyr_Ser-Thr 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1462 - - vvi:100854673 127.872