Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1455 ATGGAGCGAGAGAGAAATCAACGGTTTCTCGATGAGGGGATGTCTGAGGTGCCGAGAGAGACTCAGTTGTCAATTGCAGCTTCGTCGATGTTTCCAGGGTTTAGGTTTTCGCCGACTGATGAGGAGTTGATATCTCATTATCTGAAGAAGAAGATTCAAGGCTCTGAGAAAAGCGTTGAAGTTATTGCTGAGGTTGAAATCTGTAAATACGAACCTTGGGACTTACCAGCCAAATCTATTATTGAATCGGAGAATGAGTGGTTCTTCTTTTCTCCTCGTGGAAGGAAGTATCCAAATGGCTCTCAAAGTAAGAGGGCAACTGAATATGGTTACTGGAAAGCCACTGGGAAAGAGCGAATTGTGAAGTCAGGTTCTACTTTGATTGGTTCAAAACGAACTTTGGTGTTCCACATAGGCCGTGCACCAAAAGGGGAGAGGACGGAATGGATAATGCATGAGTATTGTATGGAGGGGAAATCTCAGGATTCTCTGGTTGTTTGTCGGCTTCGAAAGAACACTGAATTTCGAATGAATGGATCTCAAAGGCGTTTGTCAACTATGACTGGTCATAACCATGCCATCTCTGAAGTTAATATTGACCAGACAAATTTGTCTGAAAGAGAGCAGGGAATTGAATCTAGTTCAAATAAGTGTAGCAGCAGTTATGATTCTTATTCTATTGGGCAAGTTGATTCTACATCTGAATCTGATCAGAAACCATCAAATGAGTTTACACAGCCGGAGTCTTCACACCAGCAGGACTGTGACAGGGCAGATGATTGTTTTGCTGAAATAATGAACGATGATATCATAAAGCTCGATGAAACTTTTCTAGCTGATAATCCTCAACTCCTATTTATGATTGCTGATAAAACTGAGCTAGAGAGAGAATCTGAACCACCAGAACCAGTTGACACAACTCAGGTACTTCCTTTTCAGGGGACAGCAAATAGAAGAATCAGATTGAAGAAGCAAGGTCCAAGAAGGATAAGTTACCCGGCAGAGTATATGAGCATTGAGCCACCAAAATATCTAATGAAGACTCTGGTTAATCGGCTCATATATTTGCTTGTGATTATCCTGACATTGTTGGTTTTGTTTTCGTCGTTGGGAGGATCAGGATGGGTTAAAAAGGTCATTCACACCACCATGTACCATGACTTTTGA 1167 0.4165 MERERNQRFLDEGMSEVPRETQLSIAASSMFPGFRFSPTDEELISHYLKKKIQGSEKSVEVIAEVEICKYEPWDLPAKSIIESENEWFFFSPRGRKYPNGSQSKRATEYGYWKATGKERIVKSGSTLIGSKRTLVFHIGRAPKGERTEWIMHEYCMEGKSQDSLVVCRLRKNTEFRMNGSQRRLSTMTGHNHAISEVNIDQTNLSEREQGIESSSNKCSSSYDSYSIGQVDSTSESDQKPSNEFTQPESSHQQDCDRADDCFAEIMNDDIIKLDETFLADNPQLLFMIADKTELERESEPPEPVDTTQVLPFQGTANRRIRLKKQGPRRISYPAEYMSIEPPKYLMKTLVNRLIYLLVIILTLLVLFSSLGGSGWVKKVIHTTMYHDF* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1455 388 Pfam No apical meristem (NAM) protein 32 155 IPR003441 GO:0003677|GO:0006355
Vvi6g1455 388 Gene3D NAC domain 39 176 IPR036093 GO:0003677|GO:0006355
Vvi6g1455 388 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 29 239 - -
Vvi6g1455 388 ProSiteProfiles NAC domain profile. 30 172 IPR003441 GO:0003677|GO:0006355
Vvi6g1455 388 MobiDBLite consensus disorder prediction 203 255 - -
Vvi6g1455 388 MobiDBLite consensus disorder prediction 203 249 - -
Vvi6g1455 388 FunFam NAC domain-containing protein 100-like 39 176 - -
Vvi6g1455 388 SUPERFAMILY NAC domain 21 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1455 Vvi-Chr6 21041227 21046146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1455 19 278 NAC Transcription Factor Family AT2G27300 53.846 6.27e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g1455 NAM 7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1455 - - vvi:100265540 753.821