Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1445 ATGATGGCGTCATTTAGGGGAATCAGCGATACCTTCCTCAGATTCTCTTCCCTAAACCCTTACCTTCTCTCCTCACAACTCATCTTCTGCAGAGGAATCGCTTCTACGCTCTTCGTTAAAGGTATATCCTTCTCCACCACAGAAAAGACTCTAGCAGAAGCATTTTCACAATTTGGTGAAGTCGTTGAAGCTAAAATAATTATGGACAAACGTAAGCTCAGACCAAAAGGTTTTGCCTATGTGACCTTCACTAGAGAGGATGAAGCTGAAAAGGCCTTGACAGAAATGAATGGGAAGGTGGTGGATGGACGAACGGTTTTGGTGGACTATGCAATGTGA 339 0.4366 MMASFRGISDTFLRFSSLNPYLLSSQLIFCRGIASTLFVKGISFSTTEKTLAEAFSQFGEVVEAKIIMDKRKLRPKGFAYVTFTREDEAEKALTEMNGKVVDGRTVLVDYAM* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1445 112 SMART rrm1_1 36 109 IPR000504 GO:0003723
Vvi6g1445 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Vvi6g1445 112 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 111 - -
Vvi6g1445 112 SMART rrm2_1 36 109 IPR003954 GO:0003676
Vvi6g1445 112 FunFam - 19 110 - -
Vvi6g1445 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 106 IPR000504 GO:0003723
Vvi6g1445 112 SUPERFAMILY RNA-binding domain, RBD 35 111 IPR035979 GO:0003676
Vvi6g1445 112 Gene3D - 32 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1445 Vvi-Chr6 20917227 20920994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1445 35 111 Eukaryotic Initiation Factors Gene Family AT3G16380 37.662 4.45e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1445 - K13195 vvi:100854881 218.394