Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1437 ATGTTTCCAAACGATTCCTGGATGATGATGGTCAATCAATCGCCCTCTCCTTCTTCCTCCTCCTCTTGGTCTCGCCACCAGGACAAGCTCTTCGAGCGAGCTCTGGTCGTCATCCCTGAGGAAACCCCCGACCGCTGGGACAAAATCGCTGCTCAAGTCCCCGGCAAGTCATCCTCTGAGGTCCGCCGCCACTACGAGGACTTGGTTCACGACGTGGCGGAGATCGACTCCGGCCGAGTGGAGTTGCCGCTGTACGAGGACGAGTCCTGCGGCTCCCCCTGGGCCTCCGACTCACGTGCGGGTCAGGTTTCGTTTTCACCGAGGCCTAGGCAGAGCGAGTCGGAGCGGAAAAAGGGCGTGCCCTGGACAGAGGAAGAACACCGGTTGTTCCTGATCGGGCTACAAAGGTACGGAAAGGGGGATTGGCGGAGCATATCAAGAAATGCGGTGGTGTCGAGAACACCCACCCAAGTAGCCAGCCATGCCCAAAAGTACTTCATGCGGCTAACCTCCGGCAAAAAAGATAAGAAAAGATCAAGCATCCATGACATCACTACTGTGGATACCTCCAACTCCCTGCCTCACTCTAATACCCAGACCTGGGTGGGAGAATCTCTTGCATCTCAAATCCCCTACTATGAAGAAGGACCCCCAAGTTTTGGATTTTCCATGTAA 675 0.5541 MFPNDSWMMMVNQSPSPSSSSSWSRHQDKLFERALVVIPEETPDRWDKIAAQVPGKSSSEVRRHYEDLVHDVAEIDSGRVELPLYEDESCGSPWASDSRAGQVSFSPRPRQSESERKKGVPWTEEEHRLFLIGLQRYGKGDWRSISRNAVVSRTPTQVASHAQKYFMRLTSGKKDKKRSSIHDITTVDTSNSLPHSNTQTWVGESLASQIPYYEEGPPSFGFSM* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1437 224 CDD SANT 121 166 IPR001005 -
Vvi6g1437 224 ProSiteProfiles Myb-like domain profile. 114 166 IPR001005 -
Vvi6g1437 224 MobiDBLite consensus disorder prediction 91 120 - -
Vvi6g1437 224 ProSiteProfiles SANT domain profile. 122 170 IPR017884 -
Vvi6g1437 224 Gene3D - 120 171 - -
Vvi6g1437 224 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 197 IPR043363 -
Vvi6g1437 224 ProSiteProfiles Myb-like domain profile. 21 69 IPR001005 -
Vvi6g1437 224 CDD SANT 28 69 IPR001005 -
Vvi6g1437 224 MobiDBLite consensus disorder prediction 95 109 - -
Vvi6g1437 224 FunFam transcription factor MYB1R1 120 171 - -
Vvi6g1437 224 SUPERFAMILY Homeodomain-like 16 70 IPR009057 -
Vvi6g1437 224 Pfam Myb-like DNA-binding domain 121 166 IPR001005 -
Vvi6g1437 224 FunFam Transcription factor SRM1 16 82 - -
Vvi6g1437 224 SMART sant 19 71 IPR001005 -
Vvi6g1437 224 SMART sant 118 168 IPR001005 -
Vvi6g1437 224 MobiDBLite consensus disorder prediction 1 25 - -
Vvi6g1437 224 SUPERFAMILY Homeodomain-like 116 170 IPR009057 -
Vvi6g1437 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 170 IPR017930 -
Vvi6g1437 224 MobiDBLite consensus disorder prediction 7 25 - -
Vvi6g1437 224 Gene3D - 15 82 - -
Vvi6g1437 224 NCBIfam myb-like DNA-binding domain, SHAQKYF class 117 168 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1437 Vvi-Chr6 20794599 20795840 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi6g1437 Myb_DNA-binding 4.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1437 - - vvi:100263868 451.055