Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1436 ATGGAGGACCTCCCACCGGGCTTTCGCTTCTACCCAACTGAAGAAGAACTTGTCTCCTTCTACCTCCGCATGAAGCTCCGGGGTAAGAGGCTGCAGGAGATCAGCCGGGTCATCCCGGATATCGACATTTATGAGCTGGAGCCAAGTCATCTTCCAAAACATGCAGGGGAGGTGTGTAAAGCGGACACTGAGCAATGGTTCTTCTTTACTCCGCGACAAGAGAGGGAGGCCCGGGGAGGAAGGCCTAGTAGGACGACTGAGTCAGGGTACTGGAAGGCCACGGGCTCTCCCAGCTACGTCTACTCTTCAGACAATCGGGTGATTGGAGTGAAGAAGACCATGGTTTTCTACAAAGGCAAAGCTCCTGCTGGCAGAAAAACCAAGTGGAAGATGCATGAGTACAGAGCCATTGAAACAGATACAACCACCCTTAACAGTACTACTGCGATTCCAAAGTTGAGGCATGAGTTCACCCTGTCCCGAGTTTATGTCGTATCCGGGAGCTTCAGAGCATTTGATCGACGGCCCCTGGGCACAGTGGTGAGAGAAGAAACCAGCCAGCAAGTTCAACAACATGCTGCTGCAGCTGCGGTGTCATCTGATGATCATGATCATGATCAGGATACTCAAATAATGGAGAAAACAAGCTCATCACCTGAAAGTTCGTGTTCAGGAGGAGACCATCTTCATCTCCAAGCCTCCCCGGCACCTATCGACGATTTTCCATGGGATTGGGATCCACTGGATGGGCTTTAA 756 0.5132 MEDLPPGFRFYPTEEELVSFYLRMKLRGKRLQEISRVIPDIDIYELEPSHLPKHAGEVCKADTEQWFFFTPRQEREARGGRPSRTTESGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPAGRKTKWKMHEYRAIETDTTTLNSTTAIPKLRHEFTLSRVYVVSGSFRAFDRRPLGTVVREETSQQVQQHAAAAAVSSDDHDHDQDTQIMEKTSSSPESSCSGGDHLHLQASPAPIDDFPWDWDPLDGL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1436 251 Gene3D NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Vvi6g1436 251 MobiDBLite consensus disorder prediction 212 228 - -
Vvi6g1436 251 MobiDBLite consensus disorder prediction 195 251 - -
Vvi6g1436 251 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Vvi6g1436 251 ProSiteProfiles NAC domain profile. 4 165 IPR003441 GO:0003677|GO:0006355
Vvi6g1436 251 SUPERFAMILY NAC domain 3 163 IPR036093 GO:0003677|GO:0006355
Vvi6g1436 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1436 Vvi-Chr6 20781080 20782012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1436 2 248 NAC Transcription Factor Family AT5G22380 54.400 2.34e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g1436 NAM 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1436 - - vvi:100263879 489.189