Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1435 ATGGTTGTGGTGTGTATACAGGGGCTTGACACAATGGTGGGTGAACATGGAACTCAGCTATCTGGGGGACAGAAGCAAAGAATTGCAATTGCAAGAGCCATTTTGAAGAACCCACGAATCTTTCTTCTTGATGAAGCAACAAGTGCACTGGATGCTAAGTCTGAACGCATCGTCCAAGATGCACTAGTAAATGTGATGGTAAATCGAACTACTGGTAAACAAATAGCACGCGTACTTGGGAAGGCACCCACAATTGCAGTAGCAGCTTATTTGAGGATGGCAGGAAGACCTCTAGTTCTCCCTTCCAGCAGTTTTTCTTACTCAGAGAACTTCTTATATATGCTAGATTCATTCGATAGGTCTTACAAGCCCAATCCTCAACTAGCTCGAGTGCTAGACATTCTTTTCATTCTGCATGCAGAACATGAGATGAATTGCTCCACAGCTGCAGCCCGACATCTTTCTTCAAGTGGTGTTGATGTATACACTGCTCTTGCTGGAGCTGCTGGAGCTGTTGGAGCATTGTATGAACTAGGACTTGATCATCCAGACACGATGAAGAGTTATGGAGATCTTGCTGTGTTCTATTACAGACTTCAACACACTGAATTGGCTCTCAAGTATGTTGGTCTTGTGTAA 639 0.4397 MVVVCIQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRIFLLDEATSALDAKSERIVQDALVNVMVNRTTGKQIARVLGKAPTIAVAAYLRMAGRPLVLPSSSFSYSENFLYMLDSFDRSYKPNPQLARVLDILFILHAEHEMNCSTAAARHLSSSGVDVYTALAGAAGAVGALYELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVGLV* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1435 212 Gene3D - 7 71 IPR027417 -
Vvi6g1435 212 PRINTS Citrate synthase signature 131 146 IPR002020 GO:0006099|GO:0046912
Vvi6g1435 212 PRINTS Citrate synthase signature 153 181 IPR002020 GO:0006099|GO:0046912
Vvi6g1435 212 PRINTS Citrate synthase signature 78 91 IPR002020 GO:0006099|GO:0046912
Vvi6g1435 212 Pfam Citrate synthase, C-terminal domain 44 172 IPR002020 GO:0006099|GO:0046912
Vvi6g1435 212 Pfam ABC transporter 9 48 IPR003439 GO:0005524
Vvi6g1435 212 SUPERFAMILY Citrate synthase 71 175 IPR036969 GO:0046912
Vvi6g1435 212 PANTHER ABC TRANSPORTER B FAMILY 7 71 IPR039421 -
Vvi6g1435 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 71 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1435 Vvi-Chr6 20766324 20767862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1435 8 71 Calmodulin-binding Proteins AT2G36910 73.438 2.77e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1435 K01647 - vvi:104878848 320.472