Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1432 ATGTCGAGGAGGAAGGTCAGGGAACCAAAGGAAGAAAATGTAACCCTTGGACCAACTGTAAGGGATGGAGAACATGTTTTTGGTGTGGCTCACATTTTTGCTTCCTTCAATGACACATTCATTCATGTGACTGATTTGTCTGGCAGAGAGACCTTGGTTCGCATCACTGGTGGCATGAAGGTGAAAGCTGACAGGGATGAGTCTTCACCATATGCAGCCATGCTTGCGGCCCAAGATGTTTCACAAAGATGCAAGGAACTTGGCGTTACTGCTCTTCATATCAAGCTCCGTGCCACTGGAGGAAATAAGACCAAGACACCTGGTCCTGGTGCCCAGTCTGCTCTCCGAGCCCTTGCTCGTTCTGGAATGAGAATTGGTCGCATAGAGGATGTTACCCCAATCCCCACTGACAGCACTCGAAGAAAGGGTGGAAGAAGAGGGAGAAGACTGTGA 453 0.4923 MSRRKVREPKEENVTLGPTVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGVTALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1432 150 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
Vvi6g1432 150 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 1 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi6g1432 150 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi6g1432 150 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 3 145 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi6g1432 150 FunFam 40S ribosomal protein S14 1 150 - -
Vvi6g1432 150 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi6g1432 150 SUPERFAMILY Translational machinery components 23 148 - -
Vvi6g1432 150 Gene3D Ribosomal protein S11 1 150 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1432 Vvi-Chr6 20727921 20731592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1432 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 89.928 2.64e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1432 K02955 - vvi:100248468 270.396