Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1427 ATGTTCATATTTCTCATGTATTCCCTGCATTTCACCCCTATAAATAGAGCCATTCTGTCTTCAATCTCCATCCAACCCTACAAGAAAATGAAGATGTCTGCAGCAGCAGTTGCTCTCGCTTTCGCCCTTGTTCTTGCAAACTTCGCCAACCAGTGCCATGGCGCACTGCAGGAGGGATTCTACAAGGGAAAATGTAACGTAGATGTTGAGAAGATAGTGTCCGGTATCATCACCCCACTAGTTGGTCAGAAACCGTGGATCACACCAGCTCTCTTGCGCATGCAGTTTCATGATTGCTTTGTCAAGGGATGTGATGCATCAATCCTACTAGATGGGAGCTCGAGCGAGAAAACTGCACCACCGAACCTAAGCGTGAGGGGATACGATGTTATCGATTTAGTCAAGGCTGCTATTGAGAAAATGTGCCCTGGAGTGGTATCTTGTGCTGATGTCATTGTCATGGCAACGAGAGATGCTGTTGCTGCGAGTAAAGGAGGGTGGTACAGTGTTCAAACAGGTAGAAGAGATGGCTTGGTATCTCTGGCTACAAATGTGAATCTCCCTGGTCCTTCAGTCTCAGTGGAGAATTCCACTGCAATATTCAACAGCAAAGGAATTAGCACTGAAGACATGGTTTACCTTCTTGGTGGTCACACTGTTGGAGTGACGCATTGTTCCCTCTTCAAAGATCGTTTGTACAATTTCAATAACACTGGGAGACCTGATCCAACCATGCAACCTTCGCTAGCTTTCTTCCTCAGATTAAGATGCCCTCAGAGTTCAACAGTTGACAACACAGTCAATCTTGACCAAGGTGGAAGCTCAGCAGATCTACTAGGCGAACCGACTTCAAACACCGTCGACAATTCCTTCTACAAGCAAATAGTGTTCCATAGAGGAGTTCTTCAAATTGATCAAGCACTGGCGTTGCATCAGCTGACCAAAGACACAGTGAACACAGTAGCCTTTGCACCAAATGACTACTTCCTTACCAAGTTTCAACAGGCCATGGTTAAGCTGGGTGCGGTTGAAGTCCTCACTGATGCTCAAGGAGAAATAAGGAAATCATGCCGAGCCACTAATTTTTAA 1089 0.4573 MFIFLMYSLHFTPINRAILSSISIQPYKKMKMSAAAVALAFALVLANFANQCHGALQEGFYKGKCNVDVEKIVSGIITPLVGQKPWITPALLRMQFHDCFVKGCDASILLDGSSSEKTAPPNLSVRGYDVIDLVKAAIEKMCPGVVSCADVIVMATRDAVAASKGGWYSVQTGRRDGLVSLATNVNLPGPSVSVENSTAIFNSKGISTEDMVYLLGGHTVGVTHCSLFKDRLYNFNNTGRPDPTMQPSLAFFLRLRCPQSSTVDNTVNLDQGGSSADLLGEPTSNTVDNSFYKQIVFHRGVLQIDQALALHQLTKDTVNTVAFAPNDYFLTKFQQAMVKLGAVEVLTDAQGEIRKSCRATNF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1427 362 Gene3D Peroxidase, domain 2 188 340 - -
Vvi6g1427 362 FunFam Peroxidase 188 340 - -
Vvi6g1427 362 FunFam Peroxidase 59 204 - -
Vvi6g1427 362 SUPERFAMILY Heme-dependent peroxidases 56 361 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 ProSitePatterns Peroxidases active site signature. 88 99 IPR019794 GO:0004601
Vvi6g1427 362 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Haem peroxidase superfamily signature 280 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Haem peroxidase superfamily signature 146 163 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Haem peroxidase superfamily signature 88 102 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Haem peroxidase superfamily signature 164 176 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 ProSiteProfiles Plant heme peroxidase family profile. 55 361 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 Gene3D - 60 361 - -
Vvi6g1427 362 PRINTS Plant peroxidase signature 145 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Plant peroxidase signature 335 348 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Plant peroxidase signature 90 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Plant peroxidase signature 126 139 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Plant peroxidase signature 294 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Plant peroxidase signature 278 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Plant peroxidase signature 164 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PRINTS Plant peroxidase signature 209 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 PANTHER PEROXIDASE 25-RELATED 43 354 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 Pfam Peroxidase 79 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1427 362 CDD secretory_peroxidase 56 360 IPR033905 GO:0004601|GO:0042744
Vvi6g1427 362 ProSitePatterns Peroxidases proximal heme-ligand signature. 210 220 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1427 Vvi-Chr6 20716998 20718517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1427 30 360 Peroxidase AT5G22410 50.898 2.73e-110 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1427 K00430 - vvi:100262192 655.21