Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1411 ATGCCAAGGGCAAAGGGAAATGCATCAGCAACCTGTAAGCCAGTTGAACCTGAAAAGCTAAGCGAGCCTGAAAAGCCAATTGAGTCTGATGAGAGGGTGGATCTTGATGAAGACAATGATCCTGATGAGGCAATGGATGAAGAGGTCGAGTATGAAGAAGTAGAGGTAGAAGAAGAAGTGGAAGAAGTGGAAGAAGAGGTAGAGGAAGAGGAAGTGGAAGAAGAAGAAGAAGAAGTAGAGGAAGAAGAGGAAGAAGAAGAGGCTAATGAAGCTGATGAACAGAAAAGCCCAAGTGGTGGTGGAGGGAAGATTGAAGACGAGGATGAGAGCAAAAAACATGCTGAGCTTCTTGCCCTGCCACCTCATGGTTCTGAAGTATATGTTGGCGGTATTTCACAAGATGCTTCTGAGGAGGACTTGAAGAGCTTTTGCGAGTCTGTAGGAGAAGTAACTGAAGTCAGAATAATGAAAGGCAAAGATTCGGGTGAGAACAAGGGCTTTGCATTTGTGACCTTTAGAAATGTAGAATTGGCTTCTAAAGCAATTGAGGAGCTGAATAATACTGAATTTAAGGGGAGAAAAATAAAATGTTCAACATCTCAAGCAAAGCATCGTCTGTTCATTGGTAATGTTCCTAGAAGCTGGGGAGAAGAAGATATAAAGAAGGTGGTGACTGAGATTGGACCTGGAGTTACAGCTGTTGAACTGGTGAAGGATATGAAGAACTCTAGCAACAACCGTGGCTTTGCTTTTATTGACTATTATAACCACGCATGTGCTGAATATTCGAGGCAGAAGATGATGAACCCGAAATTCAAACTAGACAATAATGCTCCTACTGTGAGCTGGGCTGACCCTAAGAATGCTGATTCTTCTCCTGCTTCACAGGTGAAAGCAGTATACGTGAAGAATTTGCCAAAGAACATAACCCAAGATCAGCTAAAGCAGCTTTTTGAACACCATGGAAAAATCACGAAAGTGGTTTTACCACCAGCAAAATCTGGACAGGAAAAGAGTAGAATTGGTTTTGTACACTTTGCAGAGAGGTCAAGTGCTATGAAAGCTCTTAAGAACACTGAGAAATATGAGATAGATGGCCAGGTTTTGGAGTGTTCTCTTGCAAAGCCACAGGCAGATCAGAAATCTGTTGGTGGATCTAATTCACAAAAATCAGCCCCTGATCTATGGGAGGGGACCAACTCCTGCTGGTATGGCAATGATGCCAATGCTTCTCCCTGA 1239 0.4302 MPRAKGNASATCKPVEPEKLSEPEKPIESDERVDLDEDNDPDEAMDEEVEYEEVEVEEEVEEVEEEVEEEEVEEEEEEVEEEEEEEEANEADEQKSPSGGGGKIEDEDESKKHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNADSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSAPDLWEGTNSCWYGNDANASP* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1411 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 196 IPR000504 GO:0003723
Vvi6g1411 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 369 IPR000504 GO:0003723
Vvi6g1411 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 269 IPR000504 GO:0003723
Vvi6g1411 412 MobiDBLite consensus disorder prediction 33 91 - -
Vvi6g1411 412 SUPERFAMILY RNA-binding domain, RBD 121 290 IPR035979 GO:0003676
Vvi6g1411 412 Coils Coil 46 96 - -
Vvi6g1411 412 SUPERFAMILY RNA-binding domain, RBD 294 391 IPR035979 GO:0003676
Vvi6g1411 412 Gene3D - 205 285 IPR012677 -
Vvi6g1411 412 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 287 395 - -
Vvi6g1411 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 286 IPR000504 GO:0003723
Vvi6g1411 412 MobiDBLite consensus disorder prediction 379 412 - -
Vvi6g1411 412 SMART rrm1_1 299 372 IPR000504 GO:0003723
Vvi6g1411 412 SMART rrm1_1 205 282 IPR000504 GO:0003723
Vvi6g1411 412 SMART rrm1_1 125 198 IPR000504 GO:0003723
Vvi6g1411 412 MobiDBLite consensus disorder prediction 1 110 - -
Vvi6g1411 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Vvi6g1411 412 Gene3D - 287 401 IPR012677 -
Vvi6g1411 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Vvi6g1411 412 MobiDBLite consensus disorder prediction 375 412 - -
Vvi6g1411 412 CDD RRM_SF 126 198 - -
Vvi6g1411 412 MobiDBLite consensus disorder prediction 17 32 - -
Vvi6g1411 412 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 383 - -
Vvi6g1411 412 SMART rrm2_1 299 372 IPR003954 GO:0003676
Vvi6g1411 412 SMART rrm2_1 125 198 IPR003954 GO:0003676
Vvi6g1411 412 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 205 285 - -
Vvi6g1411 412 Gene3D - 28 204 IPR012677 -
Vvi6g1411 412 FunFam RNA recognition motif-containing protein 27 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1411 Vvi-Chr6 20432662 20448343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1411 126 381 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 2.25e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1411 K13161 - vvi:100267377 692.575