Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1410 ATGGAGAAAGTGGCAGTTGCAGAGGTCGAGGAGCTGCCCAAGACTATAGTGCGCAGGGTGGTGAAGGATAAGCTCTCTCAGTTCTCCGATGACGGCGATATCATTATTCACAAGGACGGTCTTCGCGCCTTCTGCGAAAGTGCACGCATTTTCATCCACTATCTATCCGCCACTGCAAATGACTTGTGTAAGGAGTCTAGGAGGCAAACAATCAATGCTGATGATGTTTTGAAAGCAATTGAAGAAATTGAGTTTCCTGAATTTGTTCAACCTCTTAAAGCCTCTCTTGATGAGTTTAGGAAAAAGAATGCTGGAAAGAAGGCCGGAGCTGCAAAGTCAAAGGAAGCAAAGAAAAGAAAAGAAGATTCATCCCTAAATAATGAGGGTGACAAGGGTAAAAATGATGGTGGAGATGAGGGGAATGAGGTCGAGGATGACTCCCATGAGCCGAAGCAGAAGAGTGCAGGAAAAAAGTCAGGAGCAGGCAAATCAAAGAAAGTGAATAAGAAGAGGAAAGTAGAAGAAGTGAAGCAAGATGATGAAGGCAATGAAGATGAGGATGACTCTCATGCTAACGAGTGA 582 0.4433 MEKVAVAEVEELPKTIVRRVVKDKLSQFSDDGDIIIHKDGLRAFCESARIFIHYLSATANDLCKESRRQTINADDVLKAIEEIEFPEFVQPLKASLDEFRKKNAGKKAGAAKSKEAKKRKEDSSLNNEGDKGKNDGGDEGNEVEDDSHEPKQKSAGKKSGAGKSKKVNKKRKVEEVKQDDEGNEDEDDSHANE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1410 193 MobiDBLite consensus disorder prediction 100 156 - -
Vvi6g1410 193 MobiDBLite consensus disorder prediction 100 193 - -
Vvi6g1410 193 SUPERFAMILY Histone-fold 12 141 IPR009072 GO:0046982
Vvi6g1410 193 FunFam DNA polymerase epsilon subunit 3 4 145 - -
Vvi6g1410 193 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 6 146 - -
Vvi6g1410 193 MobiDBLite consensus disorder prediction 179 193 - -
Vvi6g1410 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 80 IPR003958 -
Vvi6g1410 193 Gene3D Histone, subunit A 6 150 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1410 12 112 CCAAT-HAP3 Transcription Factor Family AT4G14540 31.683 3.35e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi6g1410 CBFD_NFYB_HMF 2.6e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1410 K02326 - vvi:100262207 299.286