Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1404 ATGAGGGAAGAACCCATCACCAGCATGCTTTGCAAGCCTGATTTCCAGATTCCAAAGCTTTCCTTGGGGAGGATCGATAGGCCTGGAGATGACGATGGTGATAATATTGATCAGAGGGGTGGTTCGGTACAGGTACAGGTACAGGTGCAGGTGCAGATGCAGGATTCTGTGAGGCAGAGGCTGAGGAGGCATTGGAGTGAGGTGGGTGGGAAGGTTCTGATACCTGATAAATGGGGGAAGGAGGATCTGCTAAAGGAGTGGATTGATTATTCTTCCTTTGATGCGTTGTTAGCACCCAATGGAATTGGAGTGGCTCGTGAAGCTCTTGTAGCGGCGGGACGAGGAGCCAGCACTCAAGGGTTGAGGATCTCTAGCAGGTTGGCTGCTAGGGTTTTCTTCATCTCCTCTGGAAAGAAACCTGTAGTGGATCCATTGGAAGGAAGAGGCTTCAAGCATGAGAGAAGTGTTCATCCTACCTGGATTAATGAGGATGCTGGTGCTAAGCTCCAGAGTGATGCTCTTAGAGAAGCCATCACAAACATTGTTAATGAATCCAAGGAGAAAAAGCGTAATTTTACTGAGACCATTGAGCTCCAAATCGGGCTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTGAACAAGAACAAGAAACTGGTCAAGAAACTTGCCAAGAAATACCATGCCTTTTTAGCATCAGAGGCTGTTATTAAGCAGATCCCCCGTCTTTTAGGCCCTGGGCTCAACAAGGCAGGCAAAAAAATTTTCCCAACACTTGTTACTCACCAGGAATCCCTTGAGTCTAAAGTTAATGAGACCAAGGCAATGGTAAAGTTCCAATTGAAGAAGGTCCTTTGCATGGGAGTTGCTGTGGGTAACTGCAGTATGGAGGAGAAGCAGATCTTTCAAAATGTGCAACTGAGCGTTAATTTCCTTGTCTCCTTGTTGAAGAAGAACTGGCAAAATGTGAGGTGCTTGTACCTGAAGAGCACCATGGGGAGATCAAACCGCGTCTTCTAA 1152 0.4714 MREEPITSMLCKPDFQIPKLSLGRIDRPGDDDGDNIDQRGGSVQVQVQVQVQMQDSVRQRLRRHWSEVGGKVLIPDKWGKEDLLKEWIDYSSFDALLAPNGIGVAREALVAAGRGASTQGLRISSRLAARVFFISSGKKPVVDPLEGRGFKHERSVHPTWINEDAGAKLQSDALREAITNIVNESKEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKKIFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGRSNRVF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1404 383 SUPERFAMILY Ribosomal protein L1 178 383 IPR023674 -
Vvi6g1404 383 FunFam Ribosomal protein 304 381 - -
Vvi6g1404 383 CDD Ribosomal_L1 174 382 IPR028364 -
Vvi6g1404 383 CDD BIC1_CID 58 111 - -
Vvi6g1404 383 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 176 377 - -
Vvi6g1404 383 Gene3D - 167 284 - -
Vvi6g1404 383 Gene3D - 303 381 - -
Vvi6g1404 383 FunFam Ribosomal protein L10a 166 284 - -
Vvi6g1404 383 Pfam Ribosomal protein L1p/L10e family 186 377 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1404 Vvi-Chr6 20354341 20362008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1404 167 383 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 88.479 5.82e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1404 K02865 - vvi:100263858 398.667