Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1400 ATGGCGACTCATAGGGTTGGAGAGACTAATTTATCAGGCTCAGCACCTTCAAACCACCATCTTCCATATGCAGTTCTTCATGGCATCAGCCCTCCTGCTGCAACTTTCATCAATCAAGAAGGATCTGCCTTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTCTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAGGAAGTTCAAAGTCAGGAGGAGAGAGCACTGACTCAGGATCAGCAGTGAACACTCTTTCAAGTAGAGCTGAGGCCCAGTTGGAACCGGAATCTCCTATCAGTATAAAGCCAACGTCTGATCACCAGGCTTTTGATCAGAAGCATCTGCAGTTTCAACATCAACAGCAGTTAGAGATGGCAAGTGATACTTCTAGATTAGCAGGACCATCAGAATCTCAACCAGCTGCTTCTAAACCACCCCCGGAAAAGAGGAAAGGAGCTGGATCAACGTCAGAGAAAACGCTTGATGCCAAGACACTGAGACGTTTGGCACAAAACAGAGAAGCAGCAAGAAAGAGTAGGCTGAGAAAGAAGGCGTATGTGCAGCAGCTAGAATCCAGTAGGATTAAGCTCACTCAGCTTGAACAAGACCTTCAACGAGCCAGATCCCAGGGGTTGTTCTTGGGAGGAGGAGGAGGAGGTGGTGGTGGTGGGGGAGCTGGTGGAATTATAAGCCCTGGAGCTGCAATCTTTGATATGGAATATGCAAGATGGCTCGAGGATGATCACCGGCACATGTCGGAGCTTAGAACAGGCTTGCAGGCGCATTTGTTGGATGGCGATCTTAGGGTAATAGTTGATGGATATCTCTCTCACTATGATGAGATTTTTCGACTTAAGGGAGTGGCTGCTAAATCAGATGTTTTTCACCTCATTACTGGAATGTGGACAACTCCCGCTGAGCGTTGCTTCCTTTGGATGGGCGGTTTCCGGCCGTCTGATCTCATCAAGATGTTAATAGCACAATTAGACCCCCTAACAGAGCAGCAAGTTATGGGGATTTATGGTCTCCAACATTCCTCACAACAAGCAGAAGAGGCTCTCTCCCAGGGTCAGGAGCAGCTCCAACAATCTCTCATCGACACCATTGCCAGCGGCTCGGTTGCCGATGATATGGCTCATATGGTTATGGCTTTGGGCCAGCTTACCAACCTTGAAGGCTTTGTTCGCCAGGCTGATAATTTGAGACAGCAAACCATTCACCAATTGTGTCGGATACTGACAGTTCGACAAGCAGCACGTTGTTTTTTGGTGATTGGCGAGTACTATGGCCGATTACGAGCCCTCAGCTCCCTTTGGGCATCACGGCCCCGAGAGGCCATGATGGGCGACGAGCACTCATGCCAAACAACGACAGATTTGCATATGGTGCAGTCTTCACATAGTCATTTCACCAACTTTTGA 1503 0.481 MATHRVGETNLSGSAPSNHHLPYAVLHGISPPAATFINQEGSAFDFGELEEAIVLQGVKIRNDEAKTSLFTARPAATLEMFPSWPMRFQQTQRGSSKSGGESTDSGSAVNTLSSRAEAQLEPESPISIKPTSDHQAFDQKHLQFQHQQQLEMASDTSRLAGPSESQPAASKPPPEKRKGAGSTSEKTLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGGGGGGGGGGGAGGIISPGAAIFDMEYARWLEDDHRHMSELRTGLQAHLLDGDLRVIVDGYLSHYDEIFRLKGVAAKSDVFHLITGMWTTPAERCFLWMGGFRPSDLIKMLIAQLDPLTEQQVMGIYGLQHSSQQAEEALSQGQEQLQQSLIDTIASGSVADDMAHMVMALGQLTNLEGFVRQADNLRQQTIHQLCRILTVRQAARCFLVIGEYYGRLRALSSLWASRPREAMMGDEHSCQTTTDLHMVQSSHSHFTNF* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1400 500 PANTHER TRANSCRIPTION FACTOR TGA9 133 472 - -
Vvi6g1400 500 MobiDBLite consensus disorder prediction 81 193 - -
Vvi6g1400 500 Gene3D - 190 239 - -
Vvi6g1400 500 SMART brlzneu 187 242 IPR004827 GO:0003700|GO:0006355
Vvi6g1400 500 ProSiteProfiles DOG1 domain profile. 261 469 IPR025422 GO:0006351|GO:0043565
Vvi6g1400 500 MobiDBLite consensus disorder prediction 141 164 - -
Vvi6g1400 500 Coils Coil 210 237 - -
Vvi6g1400 500 Pfam bZIP transcription factor 190 232 IPR004827 GO:0003700|GO:0006355
Vvi6g1400 500 FunFam BZIP family transcription factor 190 239 - -
Vvi6g1400 500 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 233 IPR004827 GO:0003700|GO:0006355
Vvi6g1400 500 MobiDBLite consensus disorder prediction 84 133 - -
Vvi6g1400 500 CDD bZIP_HBP1b-like 191 241 - -
Vvi6g1400 500 MobiDBLite consensus disorder prediction 178 193 - -
Vvi6g1400 500 Pfam Seed dormancy control 278 353 IPR025422 GO:0006351|GO:0043565
Vvi6g1400 500 SUPERFAMILY Leucine zipper domain 191 234 IPR046347 GO:0003700|GO:0006355
Vvi6g1400 500 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1400 Vvi-Chr6 20304813 20310989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1400 141 500 bZIP Transcription Factor Family AT1G08320 73.130 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi6g1400 DOG1 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1400 K14431 - vvi:100258619 928.702