Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1398 ATGGTGGTTTCTGAGTCTGATTCTGGAAAGGTTAAACCAAAATCACCACCACAATTGCATCAAGAAGACTCTTTGTTTCCTGCGCCAATTCGACAGAATTCGGTCTTCTCACTTACTCTTGATGAGTACCAAGTCAGGAGTGGAAAGTCTTTTGGGTCCATGAACATGGATGAACTCATCAACAGCATATGGAATGGAGATGAAAACATCCTCTATTCGGTATCCAGCCAAGACGAACCGAATAATGATAAACACATGGCTGACCAGACTGATCTCCCCCGACAAGCATCTTTCTCCATCCCTCCTCCACTATGCAAGAAAACTATAGATGAGGTGTGGTCTGAAATCAACAAAAACAAACAGCAGCAAAATTCTAACAACAATGGCAGTAACGATTCTGTTCAAGGTGAACAAACCTTTGGGGAGATGACTTTGGAAGACTTTTTAGTCAAAGCAGGGGTTGTTCAAGACGTGTTTGTTGAAGAAGCATCAGGCTCTTCCAAGCGACATATGCTAACACCTACTCAACGTTCCGGGAGCTTTCCAAATAATAATACAAACTTGGAGACAACCTTTGGCATCGGAAATATGATGGGTTTGGAATTCTCCGCTTCACAGAATTCTGGTAACAACTTGTCAAGCAATGATCTTGCAGCATATCTTGCACAAGGTAATAAGTTTCCAGGAGAAAAGAGGACAACAGATGGTACACTTGAGATGGCGGTGGAGCGTCGACAGCGTAGGATGATAAAAAATAGAGAGTCCGCAGCCCGATCACGAGCCAGGAAGCAGGCTTATACTGTGGAGCTGGAACTAGAACTGAATCAGCTTAAAGAAGAAAATACAAAGCTCAAGAAAATAGTGGTAAGAGTGGATGCGTGTCTTTCAGAAAATATACAAGAAGAGAATTTATTTACTCCACTGGCATTGTTTCTGACTTGTGTATGCTTATGTAAACATTTCTCATTGGTATAG 975 0.4195 MVVSESDSGKVKPKSPPQLHQEDSLFPAPIRQNSVFSLTLDEYQVRSGKSFGSMNMDELINSIWNGDENILYSVSSQDEPNNDKHMADQTDLPRQASFSIPPPLCKKTIDEVWSEINKNKQQQNSNNNGSNDSVQGEQTFGEMTLEDFLVKAGVVQDVFVEEASGSSKRHMLTPTQRSGSFPNNNTNLETTFGIGNMMGLEFSASQNSGNNLSSNDLAAYLAQGNKFPGEKRTTDGTLEMAVERRQRRMIKNRESAARSRARKQAYTVELELELNQLKEENTKLKKIVVRVDACLSENIQEENLFTPLALFLTCVCLCKHFSLV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1398 324 SMART brlzneu 240 304 IPR004827 GO:0003700|GO:0006355
Vvi6g1398 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 247 262 IPR004827 GO:0003700|GO:0006355
Vvi6g1398 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 242 286 IPR004827 GO:0003700|GO:0006355
Vvi6g1398 324 MobiDBLite consensus disorder prediction 74 101 - -
Vvi6g1398 324 SUPERFAMILY Leucine zipper domain 244 288 IPR046347 GO:0003700|GO:0006355
Vvi6g1398 324 CDD bZIP_plant_BZIP46 244 286 - -
Vvi6g1398 324 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 242 297 - -
Vvi6g1398 324 MobiDBLite consensus disorder prediction 1 25 - -
Vvi6g1398 324 Coils Coil 260 287 - -
Vvi6g1398 324 Gene3D - 242 297 - -
Vvi6g1398 324 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 31 287 IPR043452 GO:0003700|GO:0045893
Vvi6g1398 324 Pfam bZIP transcription factor 244 288 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1398 Vvi-Chr6 20262007 20263157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1398 31 288 bZIP Transcription Factor Family AT3G44460 48.106 3.04e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi6g1398 bZIP_1 3e-13 CL0018