Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1391 ATGGGCATAAGGAACTACCATGTAGGTGATATGAATCTTTGCTTTCAGCCTCCAACCTTCATAGAATGGCTCAAACCATCATCCTCTATCCCCCCTCCTCCTCCTCCATCATCATCTTCATCTTCTTCTTCTTCTTCCTCCTCTTCTTTTTCTTCTTCTTCTTCTGTGCCTCTACAAGTTCATCAGTTCACAAACTCCATGATCAGTTCCTTGAAACTGCCTCTGTTTTACCAACAACAGCAAGAGTTGGCTCAGGAAACAACCCAGTGTTTGCCTCTTCTAAGCAGGTTTACAGAAACAAAACCCTTGAAGGAGGAAGATTTTGGAGTTCAAAAGGAGAGCGCTGGAATTAAAGAAGAGAAATTAGAGAAAGTTACGGTGGCCTTGCACATTGGATTGCCTAGTAGTACTGGAGATTCAGATGCTCAGAACAAGTCTTTTAACTTTAAGGAAGATCAGGAACCCACGAAGACGAGCTTTCATGGGTATTCTTTCAATACCGAGAGTAGGTTTTGGATCCCAACGCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAATAACATGCAGATGCATATGTGGGGGCATGGATCTGAATATAGAAAAGGACCAGAATCCCTCAGAGGGGCACAACCAGCAGCAATGCTGAGGCTACCTTGTTATTGTTGTGCTCAAGGTTGCAAGAACAACATCAACCATCCTCGAGCAAAACCATTGAAGGACTTCAGAACACTTCAAACCCACTACAAAAGAAAGCATGGAGCAAAGCCATTCATGTGCAGAAAATGTGGAAAAACATTTGCCGTGAAAGGAGATTGGAGAACACATGAAAAGAACTGCGGAAAGTTATGGTATTGCACTTGTGGTTCTGATTTCAAACATAAAAGATCGCTAAAGGATCACATAAGATCCTTTGGGAAGGGTCATTCTCCACATCCTTCTCATGAAGGCTTTGATGATGAGAAGGAGTGCATCACTGGGTCTGAAGACGAATATGTTCGCCTGTGA 1044 0.4339 MGIRNYHVGDMNLCFQPPTFIEWLKPSSSIPPPPPPSSSSSSSSSSSSSFSSSSSVPLQVHQFTNSMISSLKLPLFYQQQQELAQETTQCLPLLSRFTETKPLKEEDFGVQKESAGIKEEKLEKVTVALHIGLPSSTGDSDAQNKSFNFKEDQEPTKTSFHGYSFNTESRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPESLRGAQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFDDEKECITGSEDEYVRL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1391 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 290 IPR013087 -
Vvi6g1391 347 Gene3D Classic Zinc Finger 185 208 - -
Vvi6g1391 347 FunFam Zinc finger protein WIP2 239 321 - -
Vvi6g1391 347 Pfam Zinc finger, C2H2 type 186 205 IPR013087 -
Vvi6g1391 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Vvi6g1391 347 MobiDBLite consensus disorder prediction 25 48 - -
Vvi6g1391 347 SUPERFAMILY beta-beta-alpha zinc fingers 154 209 IPR036236 -
Vvi6g1391 347 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Vvi6g1391 347 SMART c2h2final6 186 208 IPR013087 -
Vvi6g1391 347 SMART c2h2final6 233 265 IPR013087 -
Vvi6g1391 347 SMART c2h2final6 270 290 IPR013087 -
Vvi6g1391 347 Gene3D Classic Zinc Finger 266 328 - -
Vvi6g1391 347 PANTHER ZINC FINGER PROTEIN WIP2 20 336 IPR043584 GO:0003700|GO:0010468
Vvi6g1391 347 SUPERFAMILY beta-beta-alpha zinc fingers 256 290 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1391 Vvi-Chr6 20065059 20067674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1391 13 338 C2H2 Transcription Factor Family AT1G08290 54.571 1.88e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1391 zf-C2H2_6 0.00016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1391 - - vvi:100265548 675.626