Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1380 ATGTATAGTAATTTCAAGGAACAGGCGATAGAGTACGTGAAACAGGCCGTTCAAGAAGACAATGCTGGGAATTACAGTAAGGCGTTTCCTCTGTACATGAACGCTTTGGAGTACTTCAAAACCCACCTCAAGTACGAGAAAAACCCTAAGATCAAGGAAGCGATTACGCAGAAATTTACCGAGTATTTGCGCCGTGCGGAGGAGATTCGCGCCGTGCTCGATGACGGTGGCGCAGGGCCGGCGTCTAACGGGGACGCGGCTGTGGCCACCAGACCGAAGACGAAGCCCAAGGATGGGGAGGGCGGGGATGGGGAGGATCCGGAGCAGGCTAAGCTGCGATCGGGACTCAATTCGGCGATCATCCGGGAGAAGCCTAATGTGAAGTGGAGCGATGTGGCTGGGCTGGAGAGTGCGAAACAGTCTTTGCAGGAGGCAGTGATTTTGCCGGTGAAGTTTCCGCAGTTTTTTACTGGAAAGAGACGACCATGGAGGGCTTTTCTGTTATATGGTCCACCAGGAACAGGAAAATCATACCTAGCCAAGGCTGTTGCAACCGAAGCAGATTCTACATTTTTCAGTGTCTCTTCTTCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGTTAGTTTCAAATCTTTTTCAAATGGCTCGGGAGAGTGCTCCTTCCATCATCTTCATTGATGAAATAGACTCCTTATGTGGCCAGCGAGGAGAGTCAAATGAGAGTGAAGCTTCTCGACGTATCAAAACAGAACTACTTGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTCCTTGTTCTTGCCGCCACAAATACTCCTTATGCCCTGGATCAGGCCATTCGACGGCGATTTGACAAGCGTATATATATTCCTCTTCCAGATCTGAAGGCTCGACAGCACATGTTCAAAGTGCATCTTGGAGATACTCCTCACAACTTGACTGAAAGTGATTTTGAAAGCTTAGCTCAGAAGACAGAAGGGTTTTCTGGTTCAGATATTGCTGTTTGTGTTAAAGATGTACTGTTTGAACCTGTTCGTAAAACCCAAGATGCAATGTTTTTCATTAATACTCCAAATGATATGTGGGTACCGTGTGGACCAAAGCAACCAGGGGCAGTACAAATCTCCATGCAGGATCTTGCTGGAAAAGGACTTGCTTCAAAGATCCTTCCACCCCCCATCACAAAGAATGATTTTGATAAGGTACTGGCAAGACAAAGGCCGACCGTGAGCAAATCTGACCTTGAGGTGCACGAGAGATTCACACAGGAGTTTGGAGAGGAAGGCTGA 1302 0.477 MYSNFKEQAIEYVKQAVQEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGAGPASNGDAAVATRPKTKPKDGEGGDGEDPEQAKLRSGLNSAIIREKPNVKWSDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGESNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLAQKTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFINTPNDMWVPCGPKQPGAVQISMQDLAGKGLASKILPPPITKNDFDKVLARQRPTVSKSDLEVHERFTQEFGEEG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1380 433 SMART smart 2 79 IPR007330 -
Vvi6g1380 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Vvi6g1380 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Vvi6g1380 433 Gene3D - 6 75 - -
Vvi6g1380 433 Gene3D - 125 421 IPR027417 -
Vvi6g1380 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 429 IPR027417 -
Vvi6g1380 433 CDD MIT_VPS4 4 78 IPR045253 -
Vvi6g1380 433 FunFam vacuolar protein sorting-associated protein 4A 298 413 - -
Vvi6g1380 433 MobiDBLite consensus disorder prediction 74 110 - -
Vvi6g1380 433 SMART AAA_5 162 298 IPR003593 GO:0016887
Vvi6g1380 433 SUPERFAMILY MIT domain 2 82 IPR036181 -
Vvi6g1380 433 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vvi6g1380 433 PANTHER AAA DOMAIN-CONTAINING 16 431 - -
Vvi6g1380 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Vvi6g1380 433 MobiDBLite consensus disorder prediction 91 110 - -
Vvi6g1380 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vvi6g1380 433 CDD RecA-like_VPS4 124 294 - -
Vvi6g1380 433 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Vvi6g1380 433 Gene3D - 298 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1380 Vvi-Chr6 19898599 19916061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1380 161 354 Calmodulin-binding Proteins AT3G56690 36.224 1.19e-34 135