Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1370 ATGGCTTTTTCTATGCTTCACCTTGCCGGTCTCTTGTTCCCCTTTGTTCTACTTCTACCATCTTGGCCCTTAGCATTTTCCCAAGCTGATTCTAGAATTCCCTTGGGCTCCTCCCTTCTCGCCTCTCATGATTCTTCCTCATGGCCATCCCCTTCTGGCGAATTTGCCTTTGGATTTTACCCCCTTGACGGTCAAGCTCACTTCTTGCTTGCTATCTGGTATGAAAAAATATCAGAAAAAACGTTAGTTTGGTATGCAAATGGAGGTAATCCAGCACCAGAAGGATCTAAAGTTGAACTCACTTCTGAAGGCCAGTTTATCCTCAGTGACCCAAAAGGCAACAAGATTTGGGAGCCGGACTCTTCCATTAATGGGATCATCGCTTATGCTCTCATGCTTGATAATGGTAACTTTGTTCTTACAAATGGGAGTGGAAATTCTGGTTATGCATGGGAGAGCTTCAAGAGTCCATCGGACACAATCTTGCCGGGTCAAATACTGGATATTGGTGGAACTCTATCTTCTAGGCGAGCAGAAGGCAACTACTCAAAGGGGAGGTTCCAGCTCCGATTGATTCCTGATGGTAATTTTGTGCTGAACACCCTGGACGTGCTGACAGATACTCCAACCGATGCTTATTATTGGAGTAACACATATAGTGAAGATAGAAAGAATGCAGGCCACCAGGTAATTTTCAATGAGTCAGGTTCCCTCTATGTTGTTCTATGGAATGGAAATATTGTTAACCTCAGGTCAGAAAATATTGTCTCTACCAGAGATAATTACCATAGGGGGACTCTTGATTTTGATGGGATCTTCACCATATATACTCGCCCTAAGTCCACAGCAAATGGGAGCTGGGTTCCATCTTGGTCTATCCCAAAAGATATTTGCTCTGAGAATTGGGGTGAGTCGGGAAGTGGGATTTGTGGCTTTAACACTCACTGCATACTTGACTCCAATGGAAGGCCAATTTGTGAGTGCCTTCCTGGGTTCTCCTATATTGATCCGTCTAACAACTTCAGTGGCTGCAAGCAAGACAGACCCCAGAAATGTGAACCTGGAGGTTCAAATCCAGGGGACATATATGAAAAGGGTGAATTGATTAACATATTTTGGCCTAATTCTTCGAACTTCGAAGAGTTGAGGCCACTTGAAAATGAAGAAGACTGCTGGAAATCTTGCTTATATGACTGCAATTGCATAGTAGCTGTTCCTATTGGCAGCGCCTGTGAGAAGAAGAGACTGCCACTCACAAATGGTAGGGTGGATGGAAGTACCAACAGAAAAGCGTTCATCAAACTACCAAAACCAGATGCTTCCTCGTGTGAGCCTCCCATTCAGAATCCAGAGGAGAAGAGTAAAGGTCAGGCAACTCTAATTCTGGTGGGCTCATTTCTTCTGGGTGGCTCTGTATTTCTCAATTTCCTACTGGCAGCAGCAATTTCTCTCGTTAGACTCCGCTCAGGCCAAGAAAGACAGAAAATCACAGGAGAATCAAGCATTCTGGAGAGAAATATCCGTTCTTTCACTTACAAAGAACTCGAAGAAGCCACTGATGGGTTCAGAGAAGTCCTTGGAAGAGGAGCTTTTGGCACTGTATATAAAGGGGTCTTGTCATCATCAAATTCAAGAACTCATGTCGCAGTCAAGAATTTAGACAGATTAGCACAAGAGCGTGAAAATGAATTCAAGACAGAAGCAAGCATAATAGCAATGACCCATCACAAGAATCTAGTGAGATTGCTTGGATTCTGTGATGAGGGGCCACACAAGCTGCTGGTCTACGAGTTCATGAGCAATGGCACATTGGCTAGCTTCCTCTTTGGAGATTCAAGGCCTGACTGGAAAAAACGAATGGGGTTGGCATTTGGGATTGCAAGAGGGATCATGTACTTGCACGAGGAGTGCAGCACACAGATCATTCACTGCGACATCAAGCCCCAAAACATACTCCTCGATGATTCATTCACGGCCAGGATATCAGACTTTGGATTGGCAAAGCTTCTGATGAGTGATCAATCTCGGACACTTACAGCCATCAGAGGGACCAAAGGATACGTAGCACCAGAATGGTTCAGGAACAAGCCGATAGCAGCAAAAGTGGATGTTTATAGTTATGGGGTAATGTTGCTGGAGATCATCGGTTGCAGGAAGAGCCTAGATTTGCAACCAGGAAAAGAAGAGGAAGCGATCCTCACTGACTGGGCTTATGATTGCTATCAAGGTGGGAGAGTGGAGAAGCTGGTGGAGAATGATGAAGAAGCAAGAAACTACATGAGGACGGTGGAGAGGCTGGTGATGGTGGCAATTTGGTGCATTCAAGAGGACCCTGCTTTAAGACCTTCCATGAGAAATGTCATACAGATGCTTGAAGGAGTTGCTGAAGTTCCTGTGCCCCCATGTCCTTTCCCCTTTAGTTCAGCCATCTGA 2433 0.4505 MAFSMLHLAGLLFPFVLLLPSWPLAFSQADSRIPLGSSLLASHDSSSWPSPSGEFAFGFYPLDGQAHFLLAIWYEKISEKTLVWYANGGNPAPEGSKVELTSEGQFILSDPKGNKIWEPDSSINGIIAYALMLDNGNFVLTNGSGNSGYAWESFKSPSDTILPGQILDIGGTLSSRRAEGNYSKGRFQLRLIPDGNFVLNTLDVLTDTPTDAYYWSNTYSEDRKNAGHQVIFNESGSLYVVLWNGNIVNLRSENIVSTRDNYHRGTLDFDGIFTIYTRPKSTANGSWVPSWSIPKDICSENWGESGSGICGFNTHCILDSNGRPICECLPGFSYIDPSNNFSGCKQDRPQKCEPGGSNPGDIYEKGELINIFWPNSSNFEELRPLENEEDCWKSCLYDCNCIVAVPIGSACEKKRLPLTNGRVDGSTNRKAFIKLPKPDASSCEPPIQNPEEKSKGQATLILVGSFLLGGSVFLNFLLAAAISLVRLRSGQERQKITGESSILERNIRSFTYKELEEATDGFREVLGRGAFGTVYKGVLSSSNSRTHVAVKNLDRLAQERENEFKTEASIIAMTHHKNLVRLLGFCDEGPHKLLVYEFMSNGTLASFLFGDSRPDWKKRMGLAFGIARGIMYLHEECSTQIIHCDIKPQNILLDDSFTARISDFGLAKLLMSDQSRTLTAIRGTKGYVAPEWFRNKPIAAKVDVYSYGVMLLEIIGCRKSLDLQPGKEEEAILTDWAYDCYQGGRVEKLVENDEEARNYMRTVERLVMVAIWCIQEDPALRPSMRNVIQMLEGVAEVPVPPCPFPFSSAI* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1370 810 SMART serkin_6 520 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1370 810 Gene3D Transferase(Phosphotransferase) domain 1 599 798 - -
Vvi6g1370 810 ProSiteProfiles Bulb-type lectin domain profile. 31 153 IPR001480 -
Vvi6g1370 810 FunFam S-receptor-like serine/threonine-protein kinase 489 598 - -
Vvi6g1370 810 FunFam Serine/threonine-protein kinase 158 301 - -
Vvi6g1370 810 CDD B_lectin 50 157 IPR001480 -
Vvi6g1370 810 ProSitePatterns Protein kinases ATP-binding region signature. 526 551 IPR017441 GO:0005524
Vvi6g1370 810 SMART blect_4 30 157 IPR001480 -
Vvi6g1370 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 217 IPR036426 -
Vvi6g1370 810 Pfam Protein tyrosine and serine/threonine kinase 523 791 IPR001245 GO:0004672|GO:0006468
Vvi6g1370 810 Gene3D - 27 155 IPR036426 -
Vvi6g1370 810 Gene3D - 157 299 - -
Vvi6g1370 810 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 42 805 - -
Vvi6g1370 810 SUPERFAMILY Protein kinase-like (PK-like) 502 792 IPR011009 -
Vvi6g1370 810 ProSiteProfiles Protein kinase domain profile. 520 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1370 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vvi6g1370 810 Pfam D-mannose binding lectin 81 168 IPR001480 -
Vvi6g1370 810 Gene3D Phosphorylase Kinase; domain 1 484 598 - -
Vvi6g1370 810 CDD STKc_IRAK 526 793 - -
Vvi6g1370 810 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 799 - -
Vvi6g1370 810 PIRSF SRK 1 809 IPR024171 GO:0004674
Vvi6g1370 810 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 27 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1370 Vvi-Chr6 19751973 19754405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1370 506 793 Receptor kinase-like Gene Family AT1G60800 41.695 3.19e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi6g1370 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1370 - - vvi:100253318 1626.68