Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1361 ATGAGCGGCGAAATCAGAAGGCGAGATCGCGCAGATGTGTGGAAGCACAAGAAACAGAAGCTGATCCGAAATGCCGAAGAGGAAGTGGAGTCGAAGCTAGGGTTGGATCTCTTCTCCGAAGGCGAAAAGCGCCTCGGTTGGTTGCTCACCTTCGCATCCTCATCTTGGGAGGATGAAGAGACCCACAAGGTCTACAGCTGCGTTGATCTTTATTTTGTTTCTCAGGATGGTTCTTCTTTCAAATCAAAGTACAAGTTTCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAATGGATGTTGAGGCATATTTGAGACGACGCTATGAAGGTCAGATTGCGGATATAGAGATTATGTATAAAGAGGACCTCGATTTAAAAAACCATTTGTCTGGCTTATGCAAATCTTATCTAAAGATATCTTTTGATAATGTTCAACAATTAATGCACGTGAAGAGTGATCTTCTGCATGTTGTTGAAAGAAACCGGGCGAAATTTGATGCTGCAGAAGCTTATGAATCCATATTGACAGGGAAAAGGTACGGCTCCATAATTGCTGCTCCAGCAGAAAAAGCCTTCTTATATTTCATAGATTATATTGTTGATCTCCGCGAGTATGACGTTCCTTATCATGTTCGGTTTGCCATTGACAAAGATGTCAGATGCGGGCAATGGTATGATGTCAATGTATCCAGTGCTGGTGTTATGCTAGAGAGGAGGACTGATCTTTTGCAACGTGCTGAAGTTCACGTGTGTGCATTTGATATTGAGACAACGAAGCTTCCATTAAAATTTCCAGATGCTGAATATGATTTAGTAATGATGATCTCATACATGGTTGATGGGCAAGGCTACCTGATAATTAACAGAGAGTGCGTTGGGGAAGATATAGAGGAGTTGGAGTATACTCCAAAACCTGAATTTGAAGGTTGTTTTAAAGTTACAAATGTAAAAAATGAGAAAGAGCTTCTTAGAATGTGGTTTGCCCATATGCGTGAGGTCAAGCCTGGAATTTATGTTACATACAATGGTGATTTTTTTGACTGGCCATTTCTGGAAAGCAGAGCTGCACATCATGGGTTGAAAATGAGTGATGAGGTAGGATTCCAATGTGACAAAAATCAGGGTGAATGTCGTGCTAAATTTTCTTGTCACCTGGATTGTTTTGCTTGGGTCAAACGTGATAGTTATCTCCCTCAGGGAAGCCAGGGGCTAAAGGCTGTTACCAAGGCTAAGCTGGGATATGATCCACTGGAGGTGAATCCTGAGGATATGGTTCGATTTGCAAAGGAATTGCCCCAGATGATGGCTTCATATTCTGTATCTGATGCTGTTTCTACTTACTACTTGTATATGACGTATGTGCATCCCTTTATTTTCTCCCTTGCAACTATAATACCCATGCCACCAGATGAAGTTTTGCGTAAAGGAAGTGGGACTCTGTGTGAAATGCTTCTTATGGTTCAGGTGGGTTCTTTGGTACATGCTTACAAGGCAAATGTTATCTGCCCAAATAAACACCAATCTGATCCTGAGAAATTCTACCATAACCAACTTTTGGAGAGTGAGACATATATAGGTGGACATGTGGAATGCCTTGAAAGTGGTGTTTTCAGATCGGATCTTCCAACTAGTTTTAAGCTTGATCCATCTTCCTATGAGCAACTGATTGTCAATCTTGATCGTGATCTACAATATGCGATTAGAGTAGAGGGAAAGATGGATGTGGAATCAGTCTCCAATTATGATGAAGTGAAGAATGCTATCAAGGAAAAGAACTTTCCTTCAAAGTTCGTGTGGAATTCTCAAGTTCCTTTCAAAGTGAAGTCCTTTGTCTGGTTAGTGGCACACAAGAAGGTGAATACTAATGATATGTTACAAGTGAGAAGACCCTACAAAGCCCTTAGTCCTGATATTTGTATCCTGTGCATGAAGCACGGGGAATCAGCAGATCATCTATTTCTTCATTGTTCCTTGACGATTGGGTTGTGGCACAGGCTATTTCAGTTAGCTAAGTTGGATTGGGTTTCCCCAAGGAGCATATATGACATGATGTCCATCAAATTTAAAGGCTTCGGTAATTCTAAGAGAGGGATAGTTTTGTGGCAAGCTGTGAGCATAGCTCTAATTCGGGTTGTGTGGTGGGAAAGAAACGCAAGGATTTTTGAGGATAAAGCAAGGAATTCAGAGTACCTTTGGGACTCTATAGTTTTCCTTGCTTCCCTTTGGGCCTTCTGTTCCAAGGCATTTAAGGGGATTCCCCTTAATGTGATTCAACTGGATTGGATAGCGCTTATGAAGTTGCAAGGTGAACCTATACGTGAAGAATTCCCCCTCATTTATCATCTAGATGTGGCTGCAATGTATCCAAATATTATTTTGACAAATAGGCTTCAGCCTTCGTCAATAGTTTCAGATGAGATTTGTACTGCATGTGATTTTAATCGTCCAGGCAAAAATTGTCTTCGTAAACTTGAATGGGTTTGGCGTGGAGAGGCATTCATGGCGAAGAAAAGTGACTATTATCATTTGAAGAGACAAATTGAGTCTGAGTTAGTTGATGGTGGAGATAGCCGGTTCTCAAAATCTTTTATTGACCTGCCTAAGACAGAGCAACAGCTGAAGCTCAAAGAGCGCTTAAAGAAATACTGCCAAAAGGCTTATAAACGGGTACTTGACAAGCCAGCCACTGAACTTCGAGAAGCAGGGATCTGCATGCGGGAAAATTCTTTTTATATTGACACTGTCCGCAGTTTTCGAGATAGAAGATATGAGTACAAAGGACTTAATAAGGTTTGGAAGGGGAAGCTATCAGAAGCCAAGGCTAGTGGAAATTCTATAAGGATCCAGGAAGCACAAGATATGGTTGTTCTCTATGATTCACTACAACTTGCTCATAAATGTATTCTCAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCGATGGAAATGGCTGGAGTTGTTACCTATACTGGAGCAAAAATCATACAGAATGCCCGCTTATTGATTGAAAAAATTGGAAGACCACTTGAACTAGACACTGATGGTATCTGGTGTGTGTTACCTGGATCTTTTCCAGAGAACTTCACCTTTAGAACAAAAGACTTGAAGAAGAAGTTGACAATTTCATATCCTTGTGTTATGCTAAATGTTGATGTGGCTAGAAATAATACAAATGATCAATACCAGACACTCGTTGATCCCATCAATAAAACATATGCAACACATAGTGAATGCTCTATTGAATTTGAAGTGGATGGACCATACAAGGCAATGATTCTTCCAGCTTCCAAGGAAGAAGGAATTTTGATTAAAAAACGCTATGCTGTCTTCAATGATGATGGAACTCTTGCAGAGCTTAAGGGTTTTGAGATCAAGCGTAGAGGTGAGCTGAAGCTCATCAAAGTTTTCCAGGCTGAGCTTTTTGACAAGTTCCTTCATGGTTCAACCTTAGAGGAATGCTATGCAGCAGTGGCTTCAGTTGCAAACCGTTGGCTTGATCTTCTTGATAATCAAGGGAAGGATATTGTGGATAGCGAGTTGCTTGATTACATATCGGAATCAAGCACCATGAGCAAGTCTTTAGCAGATTATGGTGAGCAAAAGTCATGTGCAGTGACCACTGCTAGACGGCTGGCTGATTTTCTTGGTGATACGATGGTTAAAGATAAAGGACTTCGTTGCCAGTATATAGTTGCATGCGAGCCAAGGGGAACACCTGTAAGCGAGCGTGCTGTTCCTGTTGCAATATTTGAAACTGATGCTGAAATTATGAAGTTTTATGTGAGGAAGTGGTGCAAGATTTCATCAGATGTTGGCATTCGGTCTATTGTTGATTGGTCATATTACAAACAGCGACTTGGTTCTGCAATTCAAAAAATTATAACCATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTAGTTCATCCTGATTGGCTGTATAAGAAGGTTCGTGAAAAGGAGGAAAAATTTCGCCAACGAAAATTAGTTGATATGTTTGGCTCGTTGAAGAGGGATGATAATGTCAAAATGAATGTCGATGCTATCACCTCCAATCACGTTATTTCTGAAGAGAATATTGAAGATTTGGAAGACTTCAGAAACAAAGGCAGAACTTCCTCAGCTGGACCTAGACCCATTGTTCGTTGTTATGAAGTTAATGGCAAACAACAGTCAGATGCTATGAATTGCCTAGCAAATTCCCCCCAAGAACCAGCCAATCATAGTGAAAGTGCATTGACGCCGATGCAGCCTACTGATATCTCTACTGATAATATTGACAGAAACGTGGATTATCAAGGATGGCTTGAGATGAAGAAGAGAAAATGGAAAGATGCTCGGGAGAAAAGGAAGAGGCAAAGGATGGATAATTCAAAGACATCAAATCAGACTAATGGTGTCTCAGAGCTTCCAGGTGGTGTGATAAATCATAAGCAAGCACAGGGAAGAACTGGCGTTAATTCATATTTCCGGAGGCATGAATTAGCCCTTACACACTCTTATTGGCAGATAATACAGCTTGCCCCAAGTTCACAGCATGGCCAGTTTTTTGCTTGGGTTATTGTAGAAGGAGTGATGCTCAAGATTCCTATTACTGTTCCTAGAGTGTTTTACCTCAACTCTAAAGCTCTAATAACAGAGGAGTTTCCAGGAAGGCGTGTCAACAAGACTCTTCCGCATGGGCATCATAGCTATAACCTAATTGAGATTATAATTGATGAAGATCAATTTAGGGGAGAGAGCAGAAAACTTGCAGCTCACTTAGCAGATCCAGAAGTTGAGGGAATATATGAAACAAAGGTGCCATTGGAGTTTAATGCTGTCCTCCAGATTGGGTGTGTTTGCAAAGTGGATAAAACTGCTAAAAAACGTAACATCCAAGATGGCTGGAGTTTGAGTGAGTTGCACATGAAGACCACAACTGAATGCCCTTATCTGGAACAGTCCATCTCTTTCTTTTACTTGTACCATAGCATCTCTGAGGGACGAGCTATATACGTTGGATATTTTCCTGCATCTAGAACCATATCTGTTGTGGTGGTTAACCCTTTTCAAAACAAAGAATTATCACCATCTATTATCGAAAAACAATTCCGTGAAGCTTGTGAAGCATTGTCTATTGAACCTCCTCAGCCTAGAAATGGTATCAGTTTCAAGGTGGACTACGTTGGATATGTTAAGGATGCTGAAAAATTCTTACAAAGAACAATAAATGACCACAGGCATCAACATCATGGACCTGAAGTTGCTGTTATCGAATGCCCAAATGTTCATTTGTTGAAGTCAGGTATACGGGCTTTAGACGATCTCCCATGTGTCAACATTCCTTCAAATGCTCGTGATTCTCATTATCAGGCTCTTGGATGGCAAATTGTGGCTGCAAAAATTGGAATGCAACGCTGTGCAGCGGCAACTCAGTGGTTGAATGAGAGAATTTCTCTTGCAAGATATGCCCATGTACCGCTGGGGAATTTCGAGCCTGATTGGCTTATATTTACAGCAGATCTCTTCTTTTCAAGAGCTTTACGTGACCAGCAACAGGTGCTTTGGATATCTGATAATGGAATTCCAGATCTAGGAGGCCTTAATGAAGAAGATACATGTTTTGCTGATGAGGTCCATCAACCTGTTCTTACTTATCCTGGTGCTTATAGAAAAGTTTCTGTGGAGCTAAAGATTCATCACCTTGCTGTAAATGCTCTTCTGAAAAGTAACCAAGTAAATGAAATGGAAGGAGGTGCTTTATTTGGATTTGAACAGGACATGAATATGGGAGCACATGGTTTCAATGAACAGTGTGGCTTTGATGAGGCAACCTTATGTGCGCCTACATTTCGTGTCCTAAAACAATTGATCCAAAGGTGCCTAGCAGATGCAGTTTCATCTGGAAATGTATTTGCTGATGCAATACTGCAACATCTATATCGATGGCTATACAGCCCACAATCAAAACTTCATGACCCAGCTCTTCACCGCATTCTTCACAAGGTCATGCAAAAGGTGTTTGCATTGTTGTTAGCTGAATTTCGAAAATTGGGTGCCACAATTGTATTTGCTAACTTCTCAAAGGTTATTATAGACACCGGAAAATCAGACTTGTCTGCAGCCAAAGCATACTGTGATAGTTTACTCAAAACTCTGCAAACTAGAGACTTATTTGAGTGGATTGAGATTGAGCCATTGCACTTCTGGCATTCCTTGCTTTTTATGGATCAGTACAACTATGGTGGGGTCCAGGCCAGATCCCATGGTGGATCATTAATAGGTAGTTCAGATCCAACTAGTGAAAGCATAGAAGATGAATCTCAAGTGGATATTGTATCAAGCTGGAACATTGCTGAACAATTGCCAAAGACAATTCAAGATCATTTTGTTTTGATAGTTTCTGAATTTATGTATACCCCATGGAAATATGCACGAGAGCAAGCAGCAAATAGAGCATCTGCAAGGAATGGTGACTCATGTACTCCATCAATCACTGCTGCAGCTGCTGAGGTTTTTGAATCACACATTACTGAATATCTCAAAGAGCAGATCAGCTCTTATTTTGCGGACAAGCTTCTTAGAATTGTTCGTGATACGGTTCTTCATATGAAAGGAATGAACAGATCTGAGAATGACCAGCATACTGGGGATGCTGCACTTGAGTTCATTAAGCATGTTTGTGCTGTTCTAGCTCTTGACCAAAATGTTCAGCATGATATTCTGGTAATGAGGAAGAATCTGTTAAAATATGTGCATGTGAGGGAGTTTGCTCCAGAGGCAGAGTTTTGTGATCCCTGCCAGTCTTTCATCTTACCAAATGTTATTTGCAGCTATTGCAATGACTGTAGAGACCTGGACTTATGCCGTGATTCAGCTTTATTGGCTCAGGAGTGGCGTTGTGCTGTGCCACAGTGTGGGCAGCCTTATGACCGTGAGGTAATGGAGAATGCTCTTCTTCAAATTGTACGACAGAGAGAACGTCTCTACCATGTGCAGGACTTGGTGTGCCTCAAGTGCAATCAGGTGAAAGCAGCACATTTGGCTGAGCAATGTTCATGTGCCGGCTCATTCAGGTGCAAGGAAGACGTGTCTGAATTCCAAAGCAAAATGCAGGTTTTCTTGAAAATAGCCATGCTTCAGAAATTTCAACTTCTCCAGGAATGCACCTCCTGGATTTTGGAGATCAGATAA 7206 0.4112 MSGEIRRRDRADVWKHKKQKLIRNAEEEVESKLGLDLFSEGEKRLGWLLTFASSSWEDEETHKVYSCVDLYFVSQDGSSFKSKYKFRPYFYAATKDKMEMDVEAYLRRRYEGQIADIEIMYKEDLDLKNHLSGLCKSYLKISFDNVQQLMHVKSDLLHVVERNRAKFDAAEAYESILTGKRYGSIIAAPAEKAFLYFIDYIVDLREYDVPYHVRFAIDKDVRCGQWYDVNVSSAGVMLERRTDLLQRAEVHVCAFDIETTKLPLKFPDAEYDLVMMISYMVDGQGYLIINRECVGEDIEELEYTPKPEFEGCFKVTNVKNEKELLRMWFAHMREVKPGIYVTYNGDFFDWPFLESRAAHHGLKMSDEVGFQCDKNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKELPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQVGSLVHAYKANVICPNKHQSDPEKFYHNQLLESETYIGGHVECLESGVFRSDLPTSFKLDPSSYEQLIVNLDRDLQYAIRVEGKMDVESVSNYDEVKNAIKEKNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVRRPYKALSPDICILCMKHGESADHLFLHCSLTIGLWHRLFQLAKLDWVSPRSIYDMMSIKFKGFGNSKRGIVLWQAVSIALIRVVWWERNARIFEDKARNSEYLWDSIVFLASLWAFCSKAFKGIPLNVIQLDWIALMKLQGEPIREEFPLIYHLDVAAMYPNIILTNRLQPSSIVSDEICTACDFNRPGKNCLRKLEWVWRGEAFMAKKSDYYHLKRQIESELVDGGDSRFSKSFIDLPKTEQQLKLKERLKKYCQKAYKRVLDKPATELREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIRIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGRPLELDTDGIWCVLPGSFPENFTFRTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPINKTYATHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYAAVASVANRWLDLLDNQGKDIVDSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPRGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSDVGIRSIVDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLYKKVREKEEKFRQRKLVDMFGSLKRDDNVKMNVDAITSNHVISEENIEDLEDFRNKGRTSSAGPRPIVRCYEVNGKQQSDAMNCLANSPQEPANHSESALTPMQPTDISTDNIDRNVDYQGWLEMKKRKWKDAREKRKRQRMDNSKTSNQTNGVSELPGGVINHKQAQGRTGVNSYFRRHELALTHSYWQIIQLAPSSQHGQFFAWVIVEGVMLKIPITVPRVFYLNSKALITEEFPGRRVNKTLPHGHHSYNLIEIIIDEDQFRGESRKLAAHLADPEVEGIYETKVPLEFNAVLQIGCVCKVDKTAKKRNIQDGWSLSELHMKTTTECPYLEQSISFFYLYHSISEGRAIYVGYFPASRTISVVVVNPFQNKELSPSIIEKQFREACEALSIEPPQPRNGISFKVDYVGYVKDAEKFLQRTINDHRHQHHGPEVAVIECPNVHLLKSGIRALDDLPCVNIPSNARDSHYQALGWQIVAAKIGMQRCAAATQWLNERISLARYAHVPLGNFEPDWLIFTADLFFSRALRDQQQVLWISDNGIPDLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELKIHHLAVNALLKSNQVNEMEGGALFGFEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLIQRCLADAVSSGNVFADAILQHLYRWLYSPQSKLHDPALHRILHKVMQKVFALLLAEFRKLGATIVFANFSKVIIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIEIEPLHFWHSLLFMDQYNYGGVQARSHGGSLIGSSDPTSESIEDESQVDIVSSWNIAEQLPKTIQDHFVLIVSEFMYTPWKYAREQAANRASARNGDSCTPSITAAAAEVFESHITEYLKEQISSYFADKLLRIVRDTVLHMKGMNRSENDQHTGDAALEFIKHVCAVLALDQNVQHDILVMRKNLLKYVHVREFAPEAEFCDPCQSFILPNVICSYCNDCRDLDLCRDSALLAQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHVQDLVCLKCNQVKAAHLAEQCSCAGSFRCKEDVSEFQSKMQVFLKIAMLQKFQLLQECTSWILEIR* 2402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1361 2401 MobiDBLite consensus disorder prediction 1453 1467 - -
Vvi6g1361 2401 Pfam DNA polymerase family B 947 1252 IPR006134 GO:0000166|GO:0003677
Vvi6g1361 2401 Pfam DNA polymerase family B, exonuclease domain 73 409 IPR006133 -
Vvi6g1361 2401 Gene3D Palm domain of DNA polymerase 771 1124 IPR023211 -
Vvi6g1361 2401 MobiDBLite consensus disorder prediction 1453 1484 - -
Vvi6g1361 2401 Pfam Domain of unknown function (DUF1744) 1721 2088 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vvi6g1361 2401 Gene3D - 247 477 IPR036397 GO:0003676
Vvi6g1361 2401 Pfam zinc-binding in reverse transcriptase 583 665 IPR026960 -
Vvi6g1361 2401 FunFam DNA polymerase epsilon catalytic subunit 249 477 - -
Vvi6g1361 2401 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2399 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vvi6g1361 2401 MobiDBLite consensus disorder prediction 1410 1436 - -
Vvi6g1361 2401 CDD POLBc_epsilon 520 1309 - -
Vvi6g1361 2401 FunFam DNA polymerase epsilon catalytic subunit 944 1124 - -
Vvi6g1361 2401 SUPERFAMILY Ribonuclease H-like 58 476 IPR012337 -
Vvi6g1361 2401 SMART polmehr3 248 1029 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi6g1361 2401 SUPERFAMILY DNA/RNA polymerases 501 1301 IPR043502 -
Vvi6g1361 2401 SMART DUF1744_2 1703 2088 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vvi6g1361 2401 FunFam DNA polymerase epsilon catalytic subunit 1128 1312 - -
Vvi6g1361 2401 Gene3D - 1128 1312 IPR042087 -
Vvi6g1361 2401 Gene3D DNA Polymerase, chain B, domain 1 56 239 - -
Vvi6g1361 2401 CDD DNA_polB_epsilon_exo 249 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1361 Vvi-Chr6 19550559 19636937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1361 1 593 Core DNA Replication Machinery Family AT2G27120 76.054 0.0 935
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1361 K02324 - vvi:100241432 3291.52