Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1359 ATGCTACTCAGACAACATGCTGATTTCTTACTTTTTGTTTCCATTTTTAAAGGACATTTGAAGTTTTGGAAGAAGACAGCTATTGGCATTGAATTTGCAAAGCATTTTAGATCCCATCTTAATGCCATTGAAGGGTTAGCTGTTAGTGTTGATGGTTTGCTTTGCTGCACAATTTCCAATGATGACTCTGTGAAAGTATATGATGTAGTGAACTATGACATGATGGTCATGATTCGCTTACCATTTGTTCCTGGTGCTGTTGAATGGGTTTCCAAACAAGGCGATGTCAAAGCTAGGCTTGCCATTAGTGATCGTAACTCTTCGTTTGTGCATGTGTATGATGCACGAGCTGGTTCAAATGAACCCATCATCTCGAGAGAGATCCACTTGGGCCCAATAAAAGTTATGAAGTACAATCATGTTTTTGACTCTGTGATATCTGCAGATGCCAATGGAATCATTGAGTACTGGAACCCTAATACACTTCAGTTCCCAGAGAATGAGGTGAACTTTAGATTGAAAAGTGATACGAATCTCTTTGAAATTGTGAAATGTAAAACAACTGTTTCTTCGATTGAGGTGAGCCCTGATGGTAAACAGTTTTCTATCACATCACCTGATCATAGGATCCGTATTTTTTGGTTTAAAACTGGTAAACTAAGACGGGTTTATGATGAATCCCTTGAGGTGGCCCAAGATCTTCAGAGAAGTGATGCTCCCTTATACCGGCTGGAAGCTATTGATTTTGGGAGAAGGATGGCTGTTGAGAAGGAAATTGAGAAAACAGAAAGTGCACCACAACCAAATGCAATATTTGATGGAAGCTCTAACTTCCTTATATATGCAACACTCCTTGGAATAAAAGTAGTAAACCTACATACAAATAAAGTTGCTCGAATTCTTGGAAAGGTGGAGAACAACGATAGATTCCTGAGAATTGCTTTGTATCAAGGTGACCGTAGCAGTAAAAAGGTTAGAAAAATTCCTGCAGCTGCAGCAAATGTCAATGAGAGCAAAGAACCTTTGACAGATCCCACTCTCTTATGCTGCGCTTTCAAGAAACATAGGATCTATTTGTTCAGTCGGAGAGAACCAGAGGAGCCTGAAGATGCAACAAAGGGTAGGGATGTGTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCTGCATCGGATATAGGAAAAGCTGTCACAACATCTCTTCCTGATAATGTGATCCTTCACACCACAATGGGTGATATTCATATGAGACTGTACCCAGAAGAATGCCCAAAAACTGTGGAGAATTTCACAACGCACTGCCGTAATGGCTATTATGATAATCTCATTTTTCACCGGGTCATTAAAGGCTTCATGATACAAACGGGAGATCCTTTGGGAGACGGCACTGGTGGACAGTCTATATGGGGAAGAGAATTTGAAGATGAGTTCCATAAAAGTTTACGACATGACAGGCCTTTTACATTGTCAATGGCAAATGCAGGGCCAAACACCAATGGCTCTCAGTTCTTTATTACCACAGTGGCTACTCCATGGCTGGACAACAAACACACTGTTTTTGGTAGAGTTGTCAAGGGAATGGATGTTGTACAGGGCATAGAGAAAGTGAAGACAGACAAGGCCGACAAGCCATACCAAGATGTAAAAATCCTAAACGTGACTGTGCCCAAGGCTTAA 1677 0.4091 MLLRQHADFLLFVSIFKGHLKFWKKTAIGIEFAKHFRSHLNAIEGLAVSVDGLLCCTISNDDSVKVYDVVNYDMMVMIRLPFVPGAVEWVSKQGDVKARLAISDRNSSFVHVYDARAGSNEPIISREIHLGPIKVMKYNHVFDSVISADANGIIEYWNPNTLQFPENEVNFRLKSDTNLFEIVKCKTTVSSIEVSPDGKQFSITSPDHRIRIFWFKTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPQPNAIFDGSSNFLIYATLLGIKVVNLHTNKVARILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPDELLAASDIGKAVTTSLPDNVILHTTMGDIHMRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKADKPYQDVKILNVTVPKA* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1359 558 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 401 555 IPR002130 GO:0000413|GO:0003755
Vvi6g1359 558 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 439 456 IPR020892 GO:0003755|GO:0006457
Vvi6g1359 558 Gene3D - 8 373 IPR015943 GO:0005515
Vvi6g1359 558 Gene3D - 393 558 IPR029000 -
Vvi6g1359 558 SMART WD40_4 175 214 IPR001680 GO:0005515
Vvi6g1359 558 SMART WD40_4 29 68 IPR001680 GO:0005515
Vvi6g1359 558 SMART WD40_4 119 158 IPR001680 GO:0005515
Vvi6g1359 558 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 405 555 IPR002130 GO:0000413|GO:0003755
Vvi6g1359 558 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 487 502 IPR002130 GO:0000413|GO:0003755
Vvi6g1359 558 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 418 433 IPR002130 GO:0000413|GO:0003755
Vvi6g1359 558 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 502 514 IPR002130 GO:0000413|GO:0003755
Vvi6g1359 558 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 515 530 IPR002130 GO:0000413|GO:0003755
Vvi6g1359 558 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 444 456 IPR002130 GO:0000413|GO:0003755
Vvi6g1359 558 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 400 555 IPR044666 -
Vvi6g1359 558 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 386 556 - -
Vvi6g1359 558 SUPERFAMILY WD40 repeat-like 10 226 IPR036322 GO:0005515
Vvi6g1359 558 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 1 253 - -
Vvi6g1359 558 SUPERFAMILY Cyclophilin-like 402 555 IPR029000 -
Vvi6g1359 558 CDD cyclophilin_WD40 406 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1359 Vvi-Chr6 19509999 19533564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1359 405 555 U-box Gene Family AT5G67530 46.358 3.38e-41 155