LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi6g1357	ATGGAGCCATGGCTGGAAGACTCGACGGACGACTCGAAAAGTATGAGCTTCAACTCCACTACCACTGCCACCGACATCAACCGCAGCACCAGCTCCGGCTCGGAGACCACTTGGACGACGGCTGCCTCTGGCGGTTTCCCACCCGCCACCTCCAAGCCTCACGCTTCCTCCGGTGACCCCTGCTGGGACGGCATCCGCCGAGCCAGATCCGAATCTCCCGCCGGCGCGCTCTCCTTCTCCGACCTCCGATTCGTCCAGCGCCTCGGCAGCGGTGACATCGGCTCTGTCTACCTCGTCGAGCTTAAGGCTGCCGAAGGCTGCTCCTTCGCCGCCAAAATCATGGACAAGAAAGAACTCGCCGGCCGGAACAAAGAGGGACGAGCCAGGACTGAGCGTGAAATTCTCGAAATGCTAGACCACCCCTTCCTCCCCGCGCTCTACGCCACCATCGACTCTCCGAAGTGCTCCTGCCTCCTCACCGAGTTCTGCCCTGGCGGCGACCTCCACGTTCTCCGGCAGCGCCAGCCGGCGAAGCGCTTCCACGAATCCGCCGTCAGGTTCTATGCATCAGAGGTGGTGGTGGCCCTGGAGTATGTTCACATGATGGGGATCGTCTACCGTGATCTCAAGCCTGAAAATGTGCTAGTTCGATCTGATGGCCACATCATGCTCACTGATTTTGACCTATCGTTAAAATGTGACCATTCCACATCAGTTGCTCAGATCATTTCTGATCAAAATCCACCCCTTGCACTCCCACCAAGTGATTACCCGGCTGATCCACCACCTTTCACCTCATCCTCATGCATTCTTCCCAATTGTATTGTCCCTGCTGTCTCATGCTTCCATCCCAAGCGCAAGCGAAAGAAGAAGCCAGGCCATCATGGGGGGCCTGAGTTTGTGGCTGAGCCAGTTGATGTTCGATCAATGTCATTTGTTGGGACACATGAGTATTTGGCCCCTGAGATTGTTTCTGGGGAGGGCCATGGCAGTGCTGTAGATTGGTGGACGCTAGGAATATTCATATTTGAATTATTGTATGGAGTGACACCATTTAGAGGTGTGGACAATGAGCTAACCCTAGCTAATATTGTGGCTCGAGCCCTTGAGTTCCCTAAAGAGCCATTGGTGCCTGCAACGACTAAGGACCTCATCTCTCAACTGTTGGTTAAGGACCCTGCAAGGCGAATGGGATCCACAATGGGTGCCTCAGCAATCAAACACCACCCGTTCTTCCAAGGGGTCAATTGGGCACTTTTAAGATGCACGCCCCCACCATTCATCCCCCCACCTTTCAATCGAGATGTTGTATCAGATGAAAGTTGCCCGGAAACACCAATGGACTATTATTAG	1353	0.5455	MEPWLEDSTDDSKSMSFNSTTTATDINRSTSSGSETTWTTAASGGFPPATSKPHASSGDPCWDGIRRARSESPAGALSFSDLRFVQRLGSGDIGSVYLVELKAAEGCSFAAKIMDKKELAGRNKEGRARTEREILEMLDHPFLPALYATIDSPKCSCLLTEFCPGGDLHVLRQRQPAKRFHESAVRFYASEVVVALEYVHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDHSTSVAQIISDQNPPLALPPSDYPADPPPFTSSSCILPNCIVPAVSCFHPKRKRKKKPGHHGGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELLYGVTPFRGVDNELTLANIVARALEFPKEPLVPATTKDLISQLLVKDPARRMGSTMGASAIKHHPFFQGVNWALLRCTPPPFIPPPFNRDVVSDESCPETPMDYY*	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi6g1357	450	SMART	serkin_6	82	412	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g1357	450	Gene3D	Phosphorylase Kinase; domain 1	80	166	-	-
	Vvi6g1357	450	FunFam	serine/threonine-protein kinase D6PK-like	167	234	-	-
	Vvi6g1357	450	Gene3D	Transferase(Phosphotransferase) domain 1	309	430	-	-
	Vvi6g1357	450	FunFam	serine/threonine-protein kinase D6PKL2	81	166	-	-
	Vvi6g1357	450	PANTHER	FLIPPASE KINASE 1-RELATED	18	433	-	-
	Vvi6g1357	450	MobiDBLite	consensus disorder prediction	10	46	-	-
	Vvi6g1357	450	Pfam	Protein kinase domain	84	241	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g1357	450	Pfam	Protein kinase domain	309	412	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g1357	450	CDD	STKc_phototropin_like	80	423	-	-
	Vvi6g1357	450	FunFam	serine/threonine-protein kinase D6PK-like	307	430	-	-
	Vvi6g1357	450	ProSiteProfiles	Protein kinase domain profile.	82	412	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g1357	450	SUPERFAMILY	Protein kinase-like (PK-like)	75	439	IPR011009	-
	Vvi6g1357	450	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	204	216	IPR008271	GO:0004672\|GO:0006468
	Vvi6g1357	450	Gene3D	Transferase(Phosphotransferase) domain 1	167	238	-	-
	Vvi6g1357	450	MobiDBLite	consensus disorder prediction	1	65	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi6g1357	Vvi-Chr6	19464024	19466813	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi6g1357	1	450	AGC Kinase Gene Family	AT3G44610	66.167	0.0	558

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vvi6g1357		Pkinase	6e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi6g1357	K08286		-	vvi:100263703	876.7