Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1355 ATGGGTACATTATCTGCTGGTACTAGTGAAATTGTTGAATCAGCAGAAGAGCTAGATTCAGAATTAAAAATGAATGACATAGCTGGAAGGCATCGTTTGCTGAAGCCAGGGCAAAATTATTCCATAGAAGATGATATTAATCAACTTTTTGAGGCAATTGACATCAGATGTTCAGGTAGGGTTTCGGGTACATCACACCAAGTTAGCAAAGATGCTTTCCGGAAGAGTGCAATGAAAAGACCAATTAGAGTCAGTTCTCCTCAATCATCAGGAATAGGGATTTCAGAGTCTGTAAGTTTGAAGCAGGCACTAAGGGGATTATGCATCTCTCAGGCGTCAGAGATGGCTGCTATGAAACGATTGTCGAAGCCAGCAGGTTTGTCGGGTTCCTCTGAAGCAGGAACTATCAAAAGATTGTATAGGGCAGTGGTAGTTGATGCCAGTGAATCCGGTCTTCCCTTTAATGAAGGAAAGGGGAATTTGGTAGAAATTTCGCTTGTCCCAGAAAAAAGCACATCAAGTTTTTATGAGAAGGTGCCAGAGTCCCTGCAAGTTCCCAAGGCAGAGTTGTCACAACAGTGTGCCCCTTCTTGTAATCCTGTTGCTGATGCGACAACAGCAAAATCAATGCTGCCGATTACACCTGCACAGGATGAGATTGTTCCTTTGCCAGCAGAGATTGGGAGGGAGAAGTCAAAGGCAGAGTTGGAGCAGAATGGAAAACGGAAACCAGTACATTCTTTGCTCAGTGTTGATGCTGGCGAGCGACTACCAAAGCTAGAGAAGATTGTTCCTACCTTGAATGAAGTTGCAAGCAAAACATCAACACTAGACAAGGGGCAGAAAGGTAAGTTGCATTCTGCATCTTCTCTACCTAGTGCAAGTTCTGGAAGTAAGGTAAGCAAGTCTGGTAGCTATAGCCCACACCTAATCAAGCCAGTCTTCAGGAGCAAGAACTTTGTTAAGAAGAAAGTAAAGCTAGATTCAGCTTTGGCTTCTACCCCTGCTGGTTCCAATCCACGTAATGGGACTATCAATAATGATTTGGATCCTAGTACTAGTAAATTGGTTTTCCAGACATACAACTACACTCTGAAGAATGAAACTAAAGAAAATGAGAAAGCTTCGCCAGCATCCAGTGGTAGAAATGTTAGCATTGAAGTTAGTTCAAGTGTTGTGGACTCTGATGCAAGTAAACCAGGTTTCGGTTCAAATTGCAGTAACAGAACTAGAGGTGTTACAAAAGGTGATGAGAGATCAAGATCTAGTGAAAAGGGGGAGTTCTCCCAAAGCTCAAAAAGTAGCATTGGGCAATATAGCAGTAGCACAAGTATTAGTGAGGAAAGCAATGTAAGTGGGTCTAGTCGTAGTGGGAACAGGCCTCACATGTCCAAAGACTTGAGATGGGAGGCCATTCACCATGTTCAGAAGCAGCATGAGACTTTCGGTTTGAGAAACTTCAAGTTGCTCAAGAGGCTTGGTTGTGGGGACATTGGGACTGTTTATCTTGTTGAGCTAACCGGCACAAACTGCCTATTTGCTTTGAAAGTGATGGACAATGAGTTTCTGGCAACCAGGAAGAAAATGCCTAGAGCCCAAACTGAAAGAGAAATACTGCAAATGCTGGATCATCCATTTCTCCCCACGTTATATGCCCATTTCACAACAGATAAGCTCTCATGCTTGGTTATGGAATATTGTCCAGGTGGAGATCTGCATGTGCTCCGGCAGAAGCAACCTAGCAGGAGTTTCTCTGAACAAGCTGCCCGGTTTTATGCTGCTGAAGTCCTCCTTGCATTGGAATACCTGCACATGCTTGGAGTTGTGTACCGAGACCTAAAACCTGAAAACATCCTGGTTCGGGAAGACGGTCACATCATGCTGTCAGATTTTGACTTGTCTCTCAGATGTGCCGTTAATCCGATGCTGCTCAAATCAGCTTCCCCAGTTGTAGAGCCCACAAAGAAGGCCTCAAGTCCCTGCACTGATTCCAGCTGCATACACCCTTTCTGCCTTCAACCATCCTGGCAAGTCCCATGCTTCACTCCCAGGCTTCTATCTACTACAGCAAAATCAAGGAAGCTAAAATCCGACCTTGCCACTCAGGTCACTCCTCTCCCACAGCTTGTAGCCGAGCCTACCAGTGCCCGATCCAACTCTTTCGTGGGAACTCATGAGTACTTGGCCCCTGAGATAATCAAGGGGGAGGGTCATGGGAGTGCAGTCGATTGGTGGACCTTTGGGATATTTCTATATGAGCTATTATATGGAAAGACACCCTTCAAGGGTTCAGGAAATGAGGATACATTAGCCAGTGTGGTCTCACATAGCCTCAAGTTCCCAGAAAGCCCAATGGTTAGTTTCCATGCAAGAGATTTGATCAGAGGGCTGTTAGTAAAGGAGCCAGAGAATCGGTTAGGATCAGTGAAAGGGGCGACCGAGATCAAGCAGCACTCGTTCTTTGAGGGCTTAAACTGGGCTCTGATACGCTGTGCGATACCCCCAGAAATGCCTAAATTGTGTGATGCTGGAACCGGCAGCACTGTAATGAGTATGAGTGTGCAGAAAAAGGAGAGTGCCAAGTCTGATTGCAAGGACATGAAGGATACAACAGAGTGTGTGGAGTTTGAGCTCTTCTAG 2640 0.453 MGTLSAGTSEIVESAEELDSELKMNDIAGRHRLLKPGQNYSIEDDINQLFEAIDIRCSGRVSGTSHQVSKDAFRKSAMKRPIRVSSPQSSGIGISESVSLKQALRGLCISQASEMAAMKRLSKPAGLSGSSEAGTIKRLYRAVVVDASESGLPFNEGKGNLVEISLVPEKSTSSFYEKVPESLQVPKAELSQQCAPSCNPVADATTAKSMLPITPAQDEIVPLPAEIGREKSKAELEQNGKRKPVHSLLSVDAGERLPKLEKIVPTLNEVASKTSTLDKGQKGKLHSASSLPSASSGSKVSKSGSYSPHLIKPVFRSKNFVKKKVKLDSALASTPAGSNPRNGTINNDLDPSTSKLVFQTYNYTLKNETKENEKASPASSGRNVSIEVSSSVVDSDASKPGFGSNCSNRTRGVTKGDERSRSSEKGEFSQSSKSSIGQYSSSTSISEESNVSGSSRSGNRPHMSKDLRWEAIHHVQKQHETFGLRNFKLLKRLGCGDIGTVYLVELTGTNCLFALKVMDNEFLATRKKMPRAQTEREILQMLDHPFLPTLYAHFTTDKLSCLVMEYCPGGDLHVLRQKQPSRSFSEQAARFYAAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLSDFDLSLRCAVNPMLLKSASPVVEPTKKASSPCTDSSCIHPFCLQPSWQVPCFTPRLLSTTAKSRKLKSDLATQVTPLPQLVAEPTSARSNSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLYGKTPFKGSGNEDTLASVVSHSLKFPESPMVSFHARDLIRGLLVKEPENRLGSVKGATEIKQHSFFEGLNWALIRCAIPPEMPKLCDAGTGSTVMSMSVQKKESAKSDCKDMKDTTECVEFELF* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1355 879 FunFam serine/threonine-protein kinase D6PK-like 716 839 - -
Vvi6g1355 879 Gene3D Transferase(Phosphotransferase) domain 1 567 635 - -
Vvi6g1355 879 FunFam serine/threonine-protein kinase D6PK-like 571 638 - -
Vvi6g1355 879 ProSiteProfiles Protein kinase domain profile. 487 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1355 879 MobiDBLite consensus disorder prediction 273 305 - -
Vvi6g1355 879 MobiDBLite consensus disorder prediction 332 351 - -
Vvi6g1355 879 Pfam Protein kinase domain 718 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1355 879 Pfam Protein kinase domain 488 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1355 879 FunFam Serine/threonine-protein kinase D6PK-like 485 570 - -
Vvi6g1355 879 MobiDBLite consensus disorder prediction 412 426 - -
Vvi6g1355 879 CDD STKc_phototropin_like 487 844 - -
Vvi6g1355 879 SUPERFAMILY Protein kinase-like (PK-like) 460 843 IPR011009 -
Vvi6g1355 879 MobiDBLite consensus disorder prediction 273 308 - -
Vvi6g1355 879 SMART serkin_6 487 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1355 879 MobiDBLite consensus disorder prediction 427 460 - -
Vvi6g1355 879 MobiDBLite consensus disorder prediction 331 351 - -
Vvi6g1355 879 MobiDBLite consensus disorder prediction 368 462 - -
Vvi6g1355 879 MobiDBLite consensus disorder prediction 376 411 - -
Vvi6g1355 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vvi6g1355 879 PANTHER FLIPPASE KINASE 1-RELATED 309 842 - -
Vvi6g1355 879 Gene3D Transferase(Phosphotransferase) domain 1 715 839 - -
Vvi6g1355 879 Gene3D Phosphorylase Kinase; domain 1 485 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1355 Vvi-Chr6 19447466 19451253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1355 1 879 AGC Kinase Gene Family AT3G52890 48.091 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi6g1355 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1355 - - vvi:100258540 1635.54