Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1354 ATGAGGACCTTGTACAGCAGAGTGGCAGCCCATCCTAATTTACCATTTTGCCACCTCCCTCGTTTTCTCTCTCTAAACTACCCATCATTCTCTCCCCTTCTTCCACGCCCATCTCTCCAAAACCCTAACCCAACTCTGTGTCTCCACAGACCCACCATTCCATCTTCCCCTGTGGTGTTTGCATCTGCATCAATGGCTTCTGGGCCATCCATTGACACACAGTCCAAGCCCTTCTCTGTCCTCTTTGTGTGCCTTGGCAACATCTGCAGAAGCCCAGCTGCTGAGGGTGTCTTCACTGATGCTGTCAAGAAGAGAGGGCTGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAGGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTGAGATAACTTCCATCTCAAGGCCAATCCAGCCATCTGATTTTAGAGATTTTGATCTCATCCTTGCAATGGACAAGCAAAATAGAGATGATATAATGGAGGCTTTTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAGGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCAGATCCTTACTACGGGGGACCGCAAGGTTTTGAGAAGGTTCTGGATTTACTTGAAGATGCTTGTGAATCATTATTAGACAGCATTTTGGCAGAGAACAGTCATCTTTTGGATTCTTAG 741 0.4548 MRTLYSRVAAHPNLPFCHLPRFLSLNYPSFSPLLPRPSLQNPNPTLCLHRPTIPSSPVVFASASMASGPSIDTQSKPFSVLFVCLGNICRSPAAEGVFTDAVKKRGLDSKFKIDSAGTINYHEGNLADPRMRAASKRRGIEITSISRPIQPSDFRDFDLILAMDKQNRDDIMEAFDRWRFRETLPADAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDLLEDACESLLDSILAENSHLLDS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1354 246 FunFam Low molecular weight protein-tyrosine-phosphatase 77 241 - -
Vvi6g1354 246 CDD LMWPTP 79 234 - -
Vvi6g1354 246 SUPERFAMILY Phosphotyrosine protein phosphatases I 76 236 IPR036196 -
Vvi6g1354 246 SMART LMWPc_2 78 235 IPR023485 -
Vvi6g1354 246 Pfam Low molecular weight phosphotyrosine protein phosphatase 80 233 IPR023485 -
Vvi6g1354 246 PRINTS LMW phosphotyrosine protein phosphatase signature 207 222 IPR017867 GO:0004725|GO:0006470
Vvi6g1354 246 PRINTS LMW phosphotyrosine protein phosphatase signature 123 139 IPR017867 GO:0004725|GO:0006470
Vvi6g1354 246 PRINTS LMW phosphotyrosine protein phosphatase signature 80 97 IPR017867 GO:0004725|GO:0006470
Vvi6g1354 246 Gene3D - 62 241 - -
Vvi6g1354 246 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 53 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1354 Vvi-Chr6 19441539 19446171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1354 14 240 Protein tyrosine phosphatase (PTP) family AT3G44620 60.317 4.43e-99 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1354 K25307 - vvi:100253402 497.664