Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1348 ATGATTGGGCTTTCTCCATCGAAAAAAAGGGTTGTCAAGATACTCCAGAATGTGAGCGGAATCATAAGGTCATCAAGGATGACTCTGCTTCTTGGGCCTCCTGCCTCTGGAAAAACAACTTTTCTAAAAGCGCTTTCAAGGGAACAAGATGATGATCTAAGGATAACTGGGAAAATAACCTACTGTGGTCATGAATTCAGTGAATTCGTCCCTCAGAGAACATGTGCTTATATCAGCCAGCATAAACTTCACCATGGGGAGATGACAGTCCATGAGACATTGAATTTCTCAGGACGTTGCTTGGGAGTTGGAACCAGGTATGAAATGCTAGTGGAGTTGTCAAGACGGGAGAAAGAAGTGGGTATAAAATCAGATCCTGAGATTGATGCATTCATGAAGGCCACAGCCATGGCTGGCCAAGAAACCAGTTTGATCACAGATTATGTTCTCAAGATACTTGGGCTGGATATTTGTGCTGATATTATGGTGGGAGATGAGATGAGAAGGGGCATTTCTGGTGGACAAAAGAAGTGTGTTACTACCGGTGAAATGTTAGTCGGACCAGCAAAAGCATTTTTCATGGACGAAATATCAACAGGGCTGGACAGTTCCACAACCTTTCAGATTGTCAAGTTCATGAAGCAGATGGTCCATATTCTGGACATAACCATGGTCATCTCTCTCTTGCAAACTCCACCTGAAACATATGATCTTTTTTATGACATTATTCTTCTTTCAGAAGGTAAGATTGTATACCAAGGCCCACGTGAGAATGTTCTTGAATTCTTTGAGCACATGGGATTTAGATGCCCAGACAGGAAAGAGGTTGCGGACTTTCTGCAAGAAGTAACTTCCAAGAAGGATCAAGAACAATACTGGTTTAGAAAGAACCAACCTTACAGGTATATCTCGATACCTGAGTTTGCACGGAGCTTCAACTCTTTCCATGTTGGCCAGCAGATTTTGGAAGATATTGGGAACAGAAATGAAATCTGGTCAATTAGAAGATGCACCAAAATTTTGGGGAGCACTGTTTTTAGTCTCATTAATGTTCTTCAAACAGTTCTTAGCTTTGTTTGGTGTTCATCAAATGGCTCTCTCTCTCTCTTCCGTTTCCTTGCAGCCACTGGAAGGACACCAGTTGTTGCAAACATACTTGGTAGCTTTACTTTACTCATTGTTTTTGTGCTTAGAGGTTATGTGGTGGCCAGAGTTGATATTGAGCCATGGATGATATGGGGCTACTATGCTTCACCCATGATGTATGGACAAAATGCAATTGCCATCAATGAATTTCTTGATGAGAGATGGAACAATCCTGTCACCAATTCCACTGATTCGGTTGGAGTAACACTTCTTAAGCAAATAGGCCTATTTTCAGATGAACGTTGGTGTTGGATTTGTGTAGGTGTACTTTTCGCATTTTCTCTCCTTTTCAACATTCTTTTCATTGCAGCGCTATCGTTTCTCAATTGTCCTGATCTCAACTTGGTACTGATATGTCTGAGAAATTCTCAAGGTAAAGGAATGGTTCTGCCCTTCCAGCCCCTTTCACTTGCATTCAACCATGTGAATTACTATGTGGATATGCCTGCTGAAATGAAGAGCCAATGGGTAAAAGAGGACCGTCTGCAACTGCTGCATGATGTTAGTGGTGCTTTCAGGCCTGGTATTCTGACTGCACTAGTTGGTGTGAGTGGTGCTGGAAAGACCACTTTGATGGATGTGCTAGCAGGGAGGAAGACTGGTGGGTATATTGAAGGAAGCATAAGCATTTCTGGTTACCCAAAGAACCAAGCCACATTTACTCGGGTCAGCGGTTACTGTGAACAGCACGACATCCACTCACCATATGTGACAGTTTATGAATCTCTTTTGTACTCTGCTTGGCTTCATCTTGCTTCAGATGTAAAGGATTCAACACGAAAGATGTTTGTTGAAGAAGTTATGGATTTGGTTGAGCTCCATCCATTGAGGCATGCTCTAGTTGGACTTGTGGGAGTAGATGGTCTTTCAACTGAACAGAGGAAGAGGCTCACCATAGCTGTAGAGTTAGTTGCTAATCCCTCCATCATATTTATAGATGAGCCCACATCTGGCCTTGATGCTAGAGCTGCTGCAATTGTGATGCGTACTGTAAGGAATACAGTGGATACCGGGCGAACTGTTGTATGTACAATTCACCAACCGAGCATTGATATTTTTGAAGCATTTGATGAGCTTCTGTTGATGAAGAGAGGAGGACAAGTGATTTACACTGGACCTCTTGGTCACCAGTCTCACATGATTTCTGTTCCAGGGGTTACCAAGATCAAAGAGGGTTACAATCCAGCTACCTGGATGCTTGAGGTCAGCACTTCGGCAGTTGAGGCTCAACTTGACATTGATTTTGCAGAAGTTTATGCCAACTCTGCTCTTTATCAGAGAAATCAGGATCTTATTAAAGAACTAAGCACTCCAGCACTAGTGTCAAAATATCTTTATTTCCCCACCCAATACTCCCAATCCTTTATAACTCAATGCAAGGCTTGTTTCTGGAAGCAGCACTACTCTTACTGGAGGAACTCTGAGTATAAGGCTATCTGGTTCTTCATGATGATTGCCATTGGTTTTATATTCGGTGTCATCTTCTGGAGGAAAGGAGACCAGATATACAAACAAGAGGACCTGATCAATCTATTGGGAGCCACCTATTCTGCTATTATTTTCCTCAAGACTTCAAATGCTTTTGCGGTGCAACCTGTTGTAGCAGTTGAGAGGACAGTATTCTACCGTGAAAGGGCAGCAGGAATGTACTCGGAGTTGCCTAATGCATTTGCTCAGGTGGGAGACAAAATAAGAACTTCATTAACCATATCCAAACTCACATCTGGTCTTTCAATGTGCTTTACCTACTTCTCAATGTATGGGATGATGGTTACTGCTCTCACTCCCGACTATCAAATTGCTGATATTGTTAGTTCCTTCTTCTCGAATTTCTGGAACTTGTTCTCTGGTTTCCTCATCCCCAGGCCACTAATCCCAATATGGTGGAGATGGTACTACTGGGCTTCTCCAGTTGCTTGGACAATCTACGGCATTTTCGCATCTCAAGTGGGTGACATTACATCTGAAGCTGAAATAACTGGAAGGAGTCCAAGGCCAGTGAATGAATTCATCAAAGACGAATTGGGTCTTGATCATGACTTCCTTGTACCTGTAGTTTTTTCTCATGTGGGTTGGGTCTTCCTCTTCTTCATCATGTTTGCCTATGGCATCAAGTTCATTAAGTTCCAGAGGAGAAATCAAGAGCTTATTAATGAACAAAGGACTCCTGCACCAGGGTCAAAGGATCTTCACTTCCCCACCAATATTCCCAATCCTTTATAA 3369 0.4256 MIGLSPSKKRVVKILQNVSGIIRSSRMTLLLGPPASGKTTFLKALSREQDDDLRITGKITYCGHEFSEFVPQRTCAYISQHKLHHGEMTVHETLNFSGRCLGVGTRYEMLVELSRREKEVGIKSDPEIDAFMKATAMAGQETSLITDYVLKILGLDICADIMVGDEMRRGISGGQKKCVTTGEMLVGPAKAFFMDEISTGLDSSTTFQIVKFMKQMVHILDITMVISLLQTPPETYDLFYDIILLSEGKIVYQGPRENVLEFFEHMGFRCPDRKEVADFLQEVTSKKDQEQYWFRKNQPYRYISIPEFARSFNSFHVGQQILEDIGNRNEIWSIRRCTKILGSTVFSLINVLQTVLSFVWCSSNGSLSLFRFLAATGRTPVVANILGSFTLLIVFVLRGYVVARVDIEPWMIWGYYASPMMYGQNAIAINEFLDERWNNPVTNSTDSVGVTLLKQIGLFSDERWCWICVGVLFAFSLLFNILFIAALSFLNCPDLNLVLICLRNSQGKGMVLPFQPLSLAFNHVNYYVDMPAEMKSQWVKEDRLQLLHDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFTRVSGYCEQHDIHSPYVTVYESLLYSAWLHLASDVKDSTRKMFVEEVMDLVELHPLRHALVGLVGVDGLSTEQRKRLTIAVELVANPSIIFIDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYTGPLGHQSHMISVPGVTKIKEGYNPATWMLEVSTSAVEAQLDIDFAEVYANSALYQRNQDLIKELSTPALVSKYLYFPTQYSQSFITQCKACFWKQHYSYWRNSEYKAIWFFMMIAIGFIFGVIFWRKGDQIYKQEDLINLLGATYSAIIFLKTSNAFAVQPVVAVERTVFYRERAAGMYSELPNAFAQVGDKIRTSLTISKLTSGLSMCFTYFSMYGMMVTALTPDYQIADIVSSFFSNFWNLFSGFLIPRPLIPIWWRWYYWASPVAWTIYGIFASQVGDITSEAEITGRSPRPVNEFIKDELGLDHDFLVPVVFSHVGWVFLFFIMFAYGIKFIKFQRRNQELINEQRTPAPGSKDLHFPTNIPNPL* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1348 1122 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 519 771 IPR003439 GO:0005524
Vvi6g1348 1122 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 505 942 - -
Vvi6g1348 1122 Pfam Plant PDR ABC transporter associated 437 493 IPR013581 -
Vvi6g1348 1122 SMART AAA_5 556 748 IPR003593 GO:0016887
Vvi6g1348 1122 SMART AAA_5 24 244 IPR003593 GO:0016887
Vvi6g1348 1122 MobiDBLite consensus disorder prediction 1102 1122 - -
Vvi6g1348 1122 Pfam ABC transporter 15 197 IPR003439 GO:0005524
Vvi6g1348 1122 Pfam ABC-2 type transporter 728 792 IPR043926 GO:0140359
Vvi6g1348 1122 Pfam ABC-2 type transporter 236 283 IPR043926 GO:0140359
Vvi6g1348 1122 Pfam ABC-2 type transporter 355 432 IPR013525 GO:0016020|GO:0140359
Vvi6g1348 1122 Pfam ABC-2 type transporter 959 1030 IPR013525 GO:0016020|GO:0140359
Vvi6g1348 1122 Pfam ABC-2 type transporter 839 942 IPR013525 GO:0016020|GO:0140359
Vvi6g1348 1122 FunFam ABC transporter G family member 40 533 763 - -
Vvi6g1348 1122 Pfam ABC transporter 547 699 IPR003439 GO:0005524
Vvi6g1348 1122 CDD ABCG_PDR_domain2 516 754 IPR034003 -
Vvi6g1348 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 756 IPR027417 -
Vvi6g1348 1122 Gene3D - 533 764 IPR027417 -
Vvi6g1348 1122 FunFam ABC transporter G family member 34 2 306 - -
Vvi6g1348 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 272 IPR027417 -
Vvi6g1348 1122 Gene3D - 3 304 IPR027417 -
Vvi6g1348 1122 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 2 272 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1348 Vvi-Chr6 19331347 19338994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1348 544 731 Calmodulin-binding Proteins AT2G36910 26.471 3.67e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1348 K08711 - vvi:100251704 1229.54