Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1342 ATGGAAGGCGACAATGGTGGGCAGAAAGTGGAAAACCCTAATCCTAACCCTAACAAGACAAAGGTGGTGGTGATAATGGGAGCCACGGGTTCAGGAAAATCAAAGCTGGCCATTGATTTGGCATCTCACTTCCCAATCGAGATCATCAACTCTGATTCCATGCAGGTCTACCAAGGCCTTGACGTTCTCACCAACAAGGTTCCCCTTCACGAGCAGAATGGAGTGCCTCATCATCTTTTGGGTACAATTAGCTCAAATGTGGAATTTACCTCTAAGGATTTTCGGGATTCTGCAATACCTCTCATTGATGACATAATTTCACGCAACAACTTGCCAGTGCTTGTTGGAGGTACAAATTATTATATTCAGGCTCTTGTGAGTCCATTCCTTCTAGATGATTCAGCAGAAGAGATGGATGAAAGCAGTGTACATGACCATCCTGGAGGCAACAATCGAAATTATAAACTTGATTCCAAGAGAGGTGGTTCCTGTTCTGGCTATGATCGCCTTAAAGATCTTGATCCAGTTGCAGCAAACAGAATTCATCCAAATGACCATAGAAAAATCAATCAGTACCTTGGTTTGTATGCACGCACTGGTGTTCTCCCCAGCAAACTATTCCAGGGAAAGGCTATGGAGAACTGGGGTCGAGTTGATAATTTCAAATACAGATGCTGTTTTATATGTGTGGATGCAGCTCTCCCTATACTGGATGGATATGTGGGACAAAGAGTGGACAGCATGATTGATGCTGGTTTACTTGATGAAGTGTATGACATCTACAGTCTAAATGCAGATTATACTAGAGGTCTACGGCAGGCTATTGGTGTCCGTGAATTTGAGGATTTTCTGAAAGTACTCCTTTCAGAAGGTGGACATGATAAAGAAAATGGTTTGCTGAAAGGGAATGTGAGGGAAATTTTGAAGTCTTCCAACAATGATCAGCACAACATTCTACTACAAGAGGCCATTGAAAGAGTAAAAGCAAACACCAGAAGACTTGTTCGTCGTCAAAAAAGGAGGTTTAATCGGCTACAATCTTTGTTTGGATGGGATATACACTATGTTGATGCCACGGAGTCCTCATCATGCAATCCCAGTGCTTCTTGGGCAGCAGATGTGGTTGAACCCTCTGTGAAAATAATCAGATCTTTCCTTAGAGATGATGCAAGTTCAATACCCGATTTGGAGGGCAGAAATGGTGCAGAAGGACTGAAATCAATCAACAGGGACTTGTGGACTCAATACATCTGCAAGGCTTGTGGCGATAGGGTGCTTAGAGGACTACATGAATGGGAACAACACAAACAGGGCCGAGGACATAGAAAACGAATTTCTCGGTCTCGGAACTTGCAGAGTTCTTGCTTAACAGAACAGCAGCAGCAGCAACTCCTTAGGCATGAGGCTAGCAAGCCAAGAAAGTAG 1425 0.4351 MEGDNGGQKVENPNPNPNKTKVVVIMGATGSGKSKLAIDLASHFPIEIINSDSMQVYQGLDVLTNKVPLHEQNGVPHHLLGTISSNVEFTSKDFRDSAIPLIDDIISRNNLPVLVGGTNYYIQALVSPFLLDDSAEEMDESSVHDHPGGNNRNYKLDSKRGGSCSGYDRLKDLDPVAANRIHPNDHRKINQYLGLYARTGVLPSKLFQGKAMENWGRVDNFKYRCCFICVDAALPILDGYVGQRVDSMIDAGLLDEVYDIYSLNADYTRGLRQAIGVREFEDFLKVLLSEGGHDKENGLLKGNVREILKSSNNDQHNILLQEAIERVKANTRRLVRRQKRRFNRLQSLFGWDIHYVDATESSSCNPSASWAADVVEPSVKIIRSFLRDDASSIPDLEGRNGAEGLKSINRDLWTQYICKACGDRVLRGLHEWEQHKQGRGHRKRISRSRNLQSSCLTEQQQQQLLRHEASKPRK* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1342 474 FunFam Uncharacterized protein 19 128 - -
Vvi6g1342 474 Gene3D - 152 210 - -
Vvi6g1342 474 Gene3D Classic Zinc Finger 411 454 - -
Vvi6g1342 474 Pfam IPP transferase 55 343 - -
Vvi6g1342 474 FunFam LD10347p 154 211 - -
Vvi6g1342 474 Hamap tRNA dimethylallyltransferase [miaA]. 22 387 IPR018022 GO:0008033
Vvi6g1342 474 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 22 360 IPR018022 GO:0008033
Vvi6g1342 474 MobiDBLite consensus disorder prediction 137 153 - -
Vvi6g1342 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 128 IPR027417 -
Vvi6g1342 474 FunFam tRNA dimethylallyltransferase 411 454 - -
Vvi6g1342 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 19 386 IPR039657 -
Vvi6g1342 474 MobiDBLite consensus disorder prediction 137 157 - -
Vvi6g1342 474 Gene3D - 19 406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1342 Vvi-Chr6 19262927 19283702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1342 25 464 C2H2 Transcription Factor Family AT2G27760 59.375 0.0 520