Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1341 ATGGAATCGGAGCGTGATCAGTCTTCACCCTCATCCTCCTCTTCCTCTTCTCAAACCAAATGCTCAATTTCTTCGTCCCCTGTGCATAAGCGGAAAGCAGGGAGGAAGAAGTTTCGGGAGACTCGCCACCCGGTATACAGGGGCGTGCGCCAAAGAAATGGCAATAGATGGGTATGCGAAGTGCGGGATCCCAAAACCAAGTCCAGGATATGGCTTGGGACTTTTTCCACTCCCGAAATGGCGGCTAGGGCGCATGATGTGGCCGCCCTAGCATTCAGAGGCAATTTTGCTGCGCTCAATTTCCCCGACTCCGCGTCTCGCCTGCCGCGCGCCAAGTCATCTTCAGCTGGGGACATACAGGTGGCGGCCCTTGCGGCTGCCATGGCTTTTCACTCGCCTCAGTTAGAGAGCCGAAAAAAGGTTGTGGGAGTTGCATTGGAGGATTCTGAGAGCTCAGAGGGCGCTCCATATGGTTCGAGCACGGTGTTCATGGATGAGGAGGCATTGTTTAATATGCCAGGTTTGATTAACAGCATGGCAGAAGGTTTGCTCCTTGCGCCGCCAACTATGCTTGGAGGATTCAGTTGGGATGATACAACTTCCTACACGGACTTGTCTTTGTGGAATGATGATTAA 636 0.5283 MESERDQSSPSSSSSSSQTKCSISSSPVHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVRDPKTKSRIWLGTFSTPEMAARAHDVAALAFRGNFAALNFPDSASRLPRAKSSSAGDIQVAALAAAMAFHSPQLESRKKVVGVALEDSESSEGAPYGSSTVFMDEEALFNMPGLINSMAEGLLLAPPTMLGGFSWDDTTSYTDLSLWNDD* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1341 211 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vvi6g1341 211 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vvi6g1341 211 MobiDBLite consensus disorder prediction 1 26 - -
Vvi6g1341 211 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Vvi6g1341 211 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vvi6g1341 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 209 IPR045277 GO:0003700
Vvi6g1341 211 MobiDBLite consensus disorder prediction 29 43 - -
Vvi6g1341 211 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Vvi6g1341 211 MobiDBLite consensus disorder prediction 1 43 - -
Vvi6g1341 211 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vvi6g1341 211 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vvi6g1341 211 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vvi6g1341 211 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1341 Vvi-Chr6 19254403 19255122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1341 6 211 AP2-EREBP Transcription Factor Family AT5G51990 51.887 6.85e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi6g1341 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1341 - - vvi:100265477 388.652