Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1340 ATGGACTTGGACCGTGAGTCTTCAGCTTCATCATCTTCACCAACATCCTCTCCTTCTCGGGCAAACCCTGTTTCTTCCGACTCTCGGTGCCCTTCAAGGTGCATTCCGCACAAACGGAAAACTGGAAGAAAGAAGTTCCGGAAGACGCGACACCCGATATACAGGGGCGTGCGCCAAAGAAATGAGAACAAATGGGTGAGTGAAGTGCGCGAGCCCAGTAAGAAGTCCAGGATATGGCTAGGCACCTTTCCTACTCCGGAAATGGCGGCTAGGGCGCATGATGCGGCTGCCCTAGCGCTCAGAGGCCACTTTGCTTCCCTCAATTTTCCCGATTCGGCTTGGCGCCTTCCACGCGCCAGGTCATCCTCCGCAGGAGACGTACAGTTCGCGGCGATTCAGGCCGCTAAGGCTTTTCAGCAACCTCCATCATCGTCATCTTCCACACCTTTTGTAATGGATAATATGTCAGCAGGGTCGAGGAAGATACTAGAAACTTCTTCTGTCGTAGACACACCTCAGTTAAAAAGCCAAAAGAAGGTTGTGGGAGTTTCATCGATGGATAGTAAGAGAAGGGAGAAAGCCGGAGATGGTTTCCGGACAGCGTTCGTGGATGAGGAGGCAATGTTTAATATGCCAGGTTTAATTGACAGCATGGCCGAGGGTCTGCTTCTTACTCCACCTGCTATGTGTGAAGGCTTCAGTTGGGACGATGCAGTTTCACACATTGACTTGTCTTTGTGGAATCATGATTTCCTGTCTTAA 762 0.5079 MDLDRESSASSSSPTSSPSRANPVSSDSRCPSRCIPHKRKTGRKKFRKTRHPIYRGVRQRNENKWVSEVREPSKKSRIWLGTFPTPEMAARAHDAAALALRGHFASLNFPDSAWRLPRARSSSAGDVQFAAIQAAKAFQQPPSSSSSTPFVMDNMSAGSRKILETSSVVDTPQLKSQKKVVGVSSMDSKRREKAGDGFRTAFVDEEAMFNMPGLIDSMAEGLLLTPPAMCEGFSWDDAVSHIDLSLWNHDFLS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1340 253 MobiDBLite consensus disorder prediction 35 50 - -
Vvi6g1340 253 Pfam AP2 domain 52 103 IPR001471 GO:0003700|GO:0006355
Vvi6g1340 253 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vvi6g1340 253 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vvi6g1340 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 248 IPR045277 GO:0003700
Vvi6g1340 253 MobiDBLite consensus disorder prediction 1 29 - -
Vvi6g1340 253 MobiDBLite consensus disorder prediction 1 50 - -
Vvi6g1340 253 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Vvi6g1340 253 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Vvi6g1340 253 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Vvi6g1340 253 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Vvi6g1340 253 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vvi6g1340 253 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1340 Vvi-Chr6 19216861 19217622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1340 13 250 AP2-EREBP Transcription Factor Family AT5G51990 45.378 3.51e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi6g1340 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1340 - - vvi:100248181 466.848