Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1334 ATGAGATTGGAGAAATGCTGGTTCTGTTCCTCTACCGTATATCCAGGGCATGGTATTCAGTTTGTTCGGAATGATGCAAAGATTTTTCGGTTCTGTCGATCCAAATGCCACAAGAACTTCAAGATGAAGCGGAATCCTCGTAAAGTAAAATGGACCAAGGCCTATCGGCGGTTGCACGGCAAAGACATGACTCAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAATAGGCCAGAGAGATATGATAGGAATGTTGCTGAGAATACTCTGAAGGCTATTAAGAAGATCGATAAAGTCAGAGTTGATAGAGAGGCCAGACACCATGCACTCAGAATGAAGGGCAAGAAGGCCAAGGAGCAAAGGGAAGCAGCAAAAGAGTTGGAGCAGAGCATCCACATGGTCAAAGCTCCTGCTGTGCTTCAGCAAGAGCCATCTCTCACCTTGCCCAAGATCAAAGTCAAGGTTTCCCAACAACAATCGGAGGAAAATCATGCCATGGAAGAGTGA 507 0.4556 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQSIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1334 168 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Vvi6g1334 168 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Vvi6g1334 168 SMART 4TRASH 6 44 IPR011017 -
Vvi6g1334 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Vvi6g1334 168 Coils Coil 110 130 - -
Vvi6g1334 168 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Vvi6g1334 168 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Vvi6g1334 168 PANTHER 60S RIBOSOMAL PROTEIN L24 1 167 IPR000988 -
Vvi6g1334 168 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1334 Vvi-Chr6 19169399 19173769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1334 1 168 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 70.833 7.97e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1334 K02896 - vvi:100250021 332.798