Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1325 ATGGAGTTCTGGGGAGTTGAAGTTAAGGCTGGAGAGTCCTTTAAAGTAAAATCCGAGGATGACAAGATTTTGCATCTTTCACAGGCAGCATTGGGGGAGTCAAAGAAGGAGAAAGGAAATGAATCTGTTCCTCTTTTTTTGAAAATTGATCAACAAAAGCTTGTTTTGGGAACACTTTTGCCAGCAAATATTCCTCAGCTATCTTTTGATTTGGTTTTTGATAAAGAGTTTGAGCTCTCTCACAATTGGAAAAATGGGAGTGTCTTCTTCATGGGTTACAAGTCTGTTCTTCCTGATGAATATCCTTATCATTTTTCATTTTTTGATTTTGTACTTTGTTTACCAATTATCTACTTGTTTTGCGTCTTTATCTATGCTACCAATTGTATATCATTTTTATTCAACTTTATTCTACGGGAAGCATTTTCCTTAACCATTTTTCGTCTTCTCATTGCCACGGAAGAGTTTTCTGAATTTGATGATTCTGATTCAGAGGAAGATCTCCCAGTTAACGCCATAGAAAATGGAAAACCTGAGCCAAAGGTTGAGCAAGCAAAGGCTGTACCAACCAATGCTAATGCTGGCAAAGCAAAGGTGAAGGTTGAAGAGCCACCTAAAGATGCCAAGGATGAAGAAGATGATGACGACGACAGTGATGAGGATATGGTTGATGAAGATTCTGATGAAGATTCTGATGAGGACATCATGAGTGATGCTGAAGATGGTAGTGATGAAGGATCAGAGAGTGAAGATGAAGAGACACCCAAGAAGAAGGTTGAACCAGGAAAAAAGAGGCCAACTGAATCTGCCACAAAAACACCTGTTCCTGCTAAAAAGGCTAAATTAGTTTCACCTCAAAAGACAGATGGTAAGAAGGGTGGGGCTCATACAGCAACTCCTCATCCTAACAAGAAGGCGGGGAAAACTCCTGCTAGCGGTGACAAAGGCAAGGGGCAGAGCCCAAAATCTGGTGGCCAAGTCTCTTGCAAATCTTGCAGCAAGACATTCAACTCAGAAAATGCGCTTCAATCCCATTCCAAGGCTAAGCATGGTGCCTCTTAG 1062 0.4087 MEFWGVEVKAGESFKVKSEDDKILHLSQAALGESKKEKGNESVPLFLKIDQQKLVLGTLLPANIPQLSFDLVFDKEFELSHNWKNGSVFFMGYKSVLPDEYPYHFSFFDFVLCLPIIYLFCVFIYATNCISFLFNFILREAFSLTIFRLLIATEEFSEFDDSDSEEDLPVNAIENGKPEPKVEQAKAVPTNANAGKAKVKVEEPPKDAKDEEDDDDDSDEDMVDEDSDEDSDEDIMSDAEDGSDEGSESEDEETPKKKVEPGKKRPTESATKTPVPAKKAKLVSPQKTDGKKGGAHTATPHPNKKAGKTPASGDKGKGQSPKSGGQVSCKSCSKTFNSENALQSHSKAKHGAS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1325 353 MobiDBLite consensus disorder prediction 161 332 - -
Vvi6g1325 353 ProSitePatterns Zinc finger C2H2 type domain signature. 329 350 IPR013087 -
Vvi6g1325 353 MobiDBLite consensus disorder prediction 208 249 - -
Vvi6g1325 353 FunFam Histone deacetylase HDT1 1 99 - -
Vvi6g1325 353 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Vvi6g1325 353 Gene3D Nucleoplasmin core domain 1 97 - -
Vvi6g1325 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 327 353 IPR013087 -
Vvi6g1325 353 MobiDBLite consensus disorder prediction 250 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1325 Vvi-Chr6 19042172 19047413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1325 207 346 C2H2 Transcription Factor Family AT3G44750 40.426 7.97e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1325 NPL 6.6e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1325 - - vvi:100256817 459.529