Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1320 ATGGGCAAGAAGGTCACGGATGAACTGTTATCGACCGTCCGTTCCGTAATTGGCCTGAACTACTCCGATATGGACATCATCCGTGCGCTTCACATGGCCAACAACGATGTCACCGCCGCGATCAACATCATCTTCGATACTCCAAATTTCGGAACTAAAATGGGAAAAAACACGGAAACTTTTCGCCGCAATTCGAGCTCCGTGAGTGCAATTGTCGTCTCAGATTCGTATCGAAACGAGGATGAGACGAAGAAGTGTTCTTTAGGCAATGGAACTGTCGTCTCAGATTCGAATCGAAATAATGAGGCAAAGAAGTGTTCTTTAGGGTCTAATGAAAATGATACTCCAACTCCTAGCAATTTGGTTGATAATAGTTTTGAAGCTTCGAGTCGGTGCTCGGGTTCCATTGGGAGTGAGTGGTGGTTTTTGAATTGCAGTGAACTCGCGGGATTGTCAACTTGTAAAGGGAGGAGGATGAAATCTGGGGATGAAGTGTTTTTCACATTTCCATTGAAGAAGAGCCCAAATTCTCCTTCTCCAGGGAAGCTTACTGGACGAGGACGACAGATGGGGGCTTGCTCGGAGATTGTGAGGTTCTCCACGAAAGAGTCCGGGGAGGTAGGTCGCATCCCAAATGAGTGGGCTCGGTGCCTTTTGCCGCTTGTGAGGGATAAGAAGGTTAAGATTGAGGGGTTTTGTAAAGCTGCTCCTGATGTGTTGGGCATCATGGACACTATTCTTTTATCAATCAGTGTATATATCAATAGTTCCATGTTCCGAAAGTGCCAGCAGACCTCCCTTAGAGCAGCCAGCAATTCTTCTGAGGAGTCAGTTGTTCATGCTCTCCCAACCTTGTTTAGGTTGCTGGGATTAACCCCTTTTAAAAAGGCAGAATTCAGTCCTGATGATCTGTATACGAGGAAGCGGCCTTTAGAATCAAAGGACAATTCTGGTATTCCTGGCTTACTGTCACATGTCAAGTTTAAGAATCCATCTCCAAATGGCAATGAAGTTGAAAATGAGGAGTCCATTTCAGACACTGATCTTGACAATATTGTTGGCATCGGAGACAACTCTTATCTTGAGGAAAGGGATCCCCCTAGCACCCTTCAGTGTGAACTTCGCCCCTATCAGAGGCAGGCTCTTCACTGGATGATCCAGCTGGAGAAGGGACCATGCATGGATGAGGCAGGAACAACCCTTCATCCCTGTTGGGACGCGTATCGTCTTGCAGACAAGAGGGAGCTTGTCATCTATTTGAATGCATTTACAGGTGATGCCACAACAGAATTTCCAAGCACCCTTAAAATGGCCAGAGGAGGAATTCTGGCAGATGCAATGGGGCTTGGGAAGACAATTATGACCATAGCTCTCCTTCTTGCTCATTCAGAAAAAGGTCTACTAGCCAGTAGTCAATCTACAAGTCAGCACTATCATGAAAGTAGTGAAATCAGCAGTATTTCAGATCAATCTCCAGATCTTTCAAAGAAAGCAGCTAAATTTTCAGGTTTCCATAAGCTGAAGAAGCAAGAGAATACCCTTACTAGTGGGGGCAATCTGATCATATGCCCTATGACACTTCTAGGCCAGTGGAAGGCAGAGATTGAAACTCATGCTCAACCTGGTTCTTTGTCTGTTTATGTTCATTATGGACAAGGTAGATTGAAGGATGCAAAAATTCTAGCCCAAAATGATGTTGTAATCACCACATATGGAGTGTTAGCCTCAGAATTTTCACCTGAGCATGCTGAAGACAATGGGGGACTTTACTCAGTTCATTGGTTTAGAGTAGTGCTTGATGAGGCGCATACTATAAAATCCTCTAAAAGCCAAATTTCTATGGCGGCGGCTGCACTAATTGCTGATCGCCGATGGTGTCTTACTGGTACTCCTATCCAGAACAACCTGGAGGACATTTACAGCCTTCTTCGGTTTTTGAGGGTGGAACCTTGGGGAAACTGGGCATGGTGGAATAAACTCATTCAAAAACCATTTGACGAGGGTGATGAGAGAGGATTAAAGTTGGTCCAATCCATCTTAAAGCCAATCATGTTAAGAAGAACAAAGTTTAGCACTGATCGAGAAGGCAGGCCAATTCTAGTTCTCCCTCCAGCTGACATTCAAGTGATTTATTGTGAACTTACTTCAGCTGAAAAAGACTTTTATGAGGCTCTATTTAAAAGATCCAAGGTGAAGTTTGATCAATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGTCGAGGTGATACACAGGAATTCTCTGATCTGAATAAGCTAGCTAAGCATTTCCTAAAAGGTGGCCAGAATGCCCTGGAAGGAGAAACCAAAGATCTGCCTTCACGTGCTTATATTCAAGAGGTTGTGGAGGAGCTGCGTAAGGGGGAGCAAGGAGAATGCCCTATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGGAAGACCATCAGTAGGCAAGATCTTATTACAGCTCCGACTGGAAGTCGATTCCAGATTGATGTTGAGAAAAATTGGATGGAATCATCCAAAGTTGCTGCTCTCTTGCTCGAACTAGAAAATCTCTGCTCTGTGGGCTCCAAAAGTATTTTATTTAGCCAGTGGACTGCCTTTCTCGACCTCTTGCAGATTCCCCTTTCTCGGAGTAACATTTCATTTGTTCGTCTGGATGGAACTCTGAATCAGCAGCAACGGGAAAAAGTAATTAAACAATTCTCAGAGGAAAGCAACATCCTGGTTTGTCAGAAAAAATGTGGCCTTTTTTTTTTGTCCCTTTCTCTGAAGAGAAAGGAGGTGTGGGGAAGAGAGGGTTTGGGTTTAATAGTTGACGCACATTTTTGGTGTTTGTTACATAGGTCTTGCTAA 3006 0.4408 MGKKVTDELLSTVRSVIGLNYSDMDIIRALHMANNDVTAAINIIFDTPNFGTKMGKNTETFRRNSSSVSAIVVSDSYRNEDETKKCSLGNGTVVSDSNRNNEAKKCSLGSNENDTPTPSNLVDNSFEASSRCSGSIGSEWWFLNCSELAGLSTCKGRRMKSGDEVFFTFPLKKSPNSPSPGKLTGRGRQMGACSEIVRFSTKESGEVGRIPNEWARCLLPLVRDKKVKIEGFCKAAPDVLGIMDTILLSISVYINSSMFRKCQQTSLRAASNSSEESVVHALPTLFRLLGLTPFKKAEFSPDDLYTRKRPLESKDNSGIPGLLSHVKFKNPSPNGNEVENEESISDTDLDNIVGIGDNSYLEERDPPSTLQCELRPYQRQALHWMIQLEKGPCMDEAGTTLHPCWDAYRLADKRELVIYLNAFTGDATTEFPSTLKMARGGILADAMGLGKTIMTIALLLAHSEKGLLASSQSTSQHYHESSEISSISDQSPDLSKKAAKFSGFHKLKKQENTLTSGGNLIICPMTLLGQWKAEIETHAQPGSLSVYVHYGQGRLKDAKILAQNDVVITTYGVLASEFSPEHAEDNGGLYSVHWFRVVLDEAHTIKSSKSQISMAAAALIADRRWCLTGTPIQNNLEDIYSLLRFLRVEPWGNWAWWNKLIQKPFDEGDERGLKLVQSILKPIMLRRTKFSTDREGRPILVLPPADIQVIYCELTSAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLCLRQCCDHPFLVMSRGDTQEFSDLNKLAKHFLKGGQNALEGETKDLPSRAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNPTSGFCPVCRKTISRQDLITAPTGSRFQIDVEKNWMESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRLDGTLNQQQREKVIKQFSEESNILVCQKKCGLFFLSLSLKRKEVWGREGLGLIVDAHFWCLLHRSC* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1320 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 781 881 IPR013083 -
Vvi6g1320 1001 CDD SF2_C_SNF 906 975 - -
Vvi6g1320 1001 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 138 966 - -
Vvi6g1320 1001 Pfam Helicase conserved C-terminal domain 896 962 IPR001650 -
Vvi6g1320 1001 MobiDBLite consensus disorder prediction 99 119 - -
Vvi6g1320 1001 CDD DEXDc_SHPRH-like 374 687 - -
Vvi6g1320 1001 Gene3D - 432 698 IPR038718 -
Vvi6g1320 1001 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 432 649 IPR014001 -
Vvi6g1320 1001 SMART ring_2 821 860 IPR001841 -
Vvi6g1320 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 687 IPR027417 -
Vvi6g1320 1001 ProSitePatterns Zinc finger RING-type signature. 836 845 IPR017907 -
Vvi6g1320 1001 SUPERFAMILY RING/U-box 808 867 - -
Vvi6g1320 1001 Pfam Zinc finger, C3HC4 type (RING finger) 818 866 - -
Vvi6g1320 1001 ProSiteProfiles Zinc finger RING-type profile. 821 861 IPR001841 -
Vvi6g1320 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 963 IPR027417 -
Vvi6g1320 1001 Gene3D - 703 975 IPR027417 -
Vvi6g1320 1001 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 47 IPR015940 -
Vvi6g1320 1001 FunFam DNA repair protein RAD5B 429 688 - -
Vvi6g1320 1001 SMART HIRAN_2 143 254 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi6g1320 1001 MobiDBLite consensus disorder prediction 324 344 - -
Vvi6g1320 1001 SMART ultradead3 370 668 IPR014001 -
Vvi6g1320 1001 CDD UBA_Cbl_like 9 48 - -
Vvi6g1320 1001 Pfam SNF2-related domain 377 765 IPR000330 GO:0005524|GO:0140658
Vvi6g1320 1001 Pfam HIRAN domain 146 250 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1320 Vvi-Chr6 18952516 18965970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1320 1 960 RAD5 or RAD16-like Gene Family AT5G22750 69.151 0.0 1344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi6g1320 SNF2_N 4.4e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1320 K15505 - vvi:100246473 1901.33