Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1319 ATGGAAACTGTGGTCACCAGATCGGAGCGTCGAGGGCGGAAAAGGAGAAGGATCGATGTGCAAACTGTTGCCGTTGATGGACAAGCTGGTGATGAAACAAAGCGGGCAAGATCGAATGTGTTGGTGGGTCAATATGTGTTAAAGGAATTTGAGGGTAACGGAATATTTCTTGGCAAGATTATGTATTATGATGGTGGATTGTATAGAGTTGATTATGAAGATGGGGATTGTGAGGATTTGGAAAGCAGTGAACTTTGCAGCTTTATTATGGAGGATGCTTATTTTGATGATGATTTGACTGAAAGGAGGAAGAAATTGGATGAGTTGATATTAAAGAGAAAGAATATTTCAGCAATGAAATTGGTGGAGTCTGGGAATGGTGTGGAGAGAGTAGAAGCATCGTTGGTCAGTGACTTGAGTGATGTGCCCATTCATGAAGTTGATAGTGTAGAACTGGATGGTGAAGCAGACTCGTCTAGTGATTCTTGTGAATATGCACGGGATCGAGAATTTGGCTCAGATGCTGAAACTCCAATGGTGCCACCACCACAATTGCCTCCTTCATCAGGGAATATAGGTGTGCCGGAGGAGTATGTGTCACATCTTTTCTCTGTGTATGGTTTCTTGCGCTCATTTAGTATTCGTCTGTTTTTGAGCCCATTTGCACTCGATGATTTAGTGGGGTCGCTTAATTGTACTGTTCCAAATACCTTGTTGGATGCAATTCATGTTGCTCTCTTGCGGGTGGTAAGACGGCATCTTGAAGCTTTATCTTCTTCTGGGTTAGAGCTTGCATCAAAATGCTTGTGGTGCATTGATTGGAGCTTGGTCGACACATTAACTTGGCCTGTTTACTTGGTCCAATATCTAACGATAATGGGATATACAAAGGGACTTGAGTTGAAAGGTTTTTATGCTGATGTATTAGACAGGGAGTATTACACCTTATCTGCTGGTAGGAAGTTGATTATTTTGAAAATCTTGTGTGATGATGTCTTAGACTCCGAGGAGCTACGAGCAGAGATTGACATGCGTGAGGAATCTGAAATTGGAATAGATCCTGATTCAGTTACTAATTTTCCCCCTGAAAATGGGCCAAGAAGGGTCCATCCCAGATATTCCAAAACTTCTGCTTGCAAGGATCAAGAAGCTATGCAAATCATTGCAGAAAGCCATGAGACGAAGTTATCTCGTAACTCAAATTCTTTGGGTTTTAAAACCACTGAACTGGACGTGAATGCAGCTGATGATCAAGATGTGAATGGTGATGAGTGTCGGCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGGTGCCCATCGGTGTATCATTCTAGATGTATAGGTGTGAGTAAAATGTTTATACCAGATGGACCATGGTTTTGCCCAGAATGTACGATTGACAAGATTGGGCCAACTATTACTGTGGGAACATCGCTAAGAGGAGCAGAAGTTTTTGGAATTGATGCATTTGAGCAAGTTTATTTGGGTACCTGCAATCACTTACTAGTGCTCAAGGCTTCTATTGATGCAGAAACATGTGTGAGATATTACCACCAGAATGACATTCTCAAAGTCATTCAAGTACTTTATTCATCTGAGCAATATGCAGCCTTATATTCAGGAATATGTAAAGCAATTTTGAAGTATTGGGAAATTAAAGAGAATGTATTGTTGGTGCCTGAAATTGTTGAAATGGATCCAACTTTAGCAAACAAAAAGGATGGTGCAACAATTCGCCCTTTATCACTTCCTCCTCCTGGCATTGTAAACCAGAAAGTTCTAGATACAGTAGTTGAAGGCGAGAACTGCTTGAGTAGTATAACTGAAAGTAATATAAAAAATGTAGCAGTATCATGTATTGAGACCTCGTGGGATACAATGACCAGAACTGGCTACCTTGGTCTTCAGAGGAACAGTGATACTACAGCAAAACAAATTTGTCCCCTAATGATCCCAAAGCTGCCTGAGCAGATTAAAATGGAATCTACCATGTCAACTAGTTCAACTAGCCAGCAGGTTGATCGATCTGATTTAACTCAGCAAAGTTTGGCTGACAGGTCAAGTGGGATGGACTTTGCTACATGTCTCTCAGGAAACAGCAACAGCAGTAACAGTGGATATATGACTGGTGTGTGTTTTCCAGAGAACTTGTCTTCTCAAAGTAAAAGTGGTAACCTTAGAATTGTTGGCAGAGTTAAGAGAAATACAGTTGATGATTGCACATACATGGGTGCTTTCTTCAAATCTTATGCATACATAAATAATTATGCCCATGGTGATTTTGCTGCGAGTGCTGCTGCTAATCTGGCCATTCTTTCATCAGAAGAAAATCGGGTTTCTGAGGTTCAGGCTTCAAGTAATCCCAGGAAAGTCTTGTCTGCTAACATCTCTCTGCAGGTAAAGGCTTTTTCATCAGTAGCAAATCGTTTTTTCTGGCCAAATTCTGAGAAGAAGCTTGTGGAGGTTCCAAGGGAGAGATGTGGTTGGTGTCTTTCTTGCAAGGCTTCTGTTTCAAGCAAGAGAGGATGTCTATTAAATTCCGCTGCCTTGAATGCCATTAAAGGTGCCATGAAGATCCTTGCTGGAATTCGCCCTTTGAAGAATGTAGAGGGGAATCTTCCTAGTATCGCAACATATATTTTATACATGGAGGAGAGTTTGTCTGGTCTAGTAGTTGGCCCATTTTTGAGTGCAACTTGTAGAAAACAATGGCGAAGACGAGTAGAACAAGCTTCAACCTACAGTGTGATAAAGGCCCTCTTGCTTGAACTTGAGGAAAACATCCGCATTATTGCTCTTTCTGGGGACTGGGTTAAGCTGGTGGATAATTGGTTGGTTGAAGCTTCTGTGACCCAAAGTGCTACATCTGCTATTGGGTCAACTCAGAAACGTGGGCCTGGGAGACGTAGTAAGAGACTGTCTGGTGTATCTGAAGTTGCAGATGATAGATGCCTCGACAAAGATTTCACATGGTGGCGAGGAGGGAAACTATCAAAGCACATATTCCAAAGAGGGATTTTGCCACGCTCGGCAGTTAAAAAAGCAGCTCGTCAAGGTGGTTCTAGAAAGATCCCTGGTATTTGTTATGCCGAAGTTTCTGAGATTCCTAAAAGAAGCAGACAGGTCATTTGGAGAGCTGCTGTTGAAATGAGTAAGAATGCGTCACAGCTTGCTCTTCAGGTCAGATACCTTGACCTTCATATAAGATGGGGTGATCTTGTTCGTCCTGAGCAGAACATCCAAGATGTTAAAGGTCCAGAAACAGAAGCTTCTGCTTTTAGAAATGCATTCATCTGTGATAAGAAAATTGTTGAAAACAAGATCAGATATGGGGTTGCCTTTGGGAATCAAAAGCATCTTCCTTCCCGTGTCATGAAGAATATAATAGAAGTTGAGCAAATCCAAGATGGAAATGACAAGTACTGGTTTTATGAAATGCGTATTCCTTTGTATTTGATTAAAGAGTATGAAGAAAGTGTAGAGACGCTTTTGCCATCAGATAAGCAGCCCTCAAATGTTCTATCCAAGTTACAAAGATTGCAGCTGAAAGCTTCACGTAGGGATATATTCTCCTATCTTATGCGTAAGAGGGATAACTTGGACAAGTGCTCATGTGCCTCATGTCAACTGGACGTTTTGCTTGGGAGTGCTGTCAAATGTGGTGCATGCCAAGGTATACTCATTACCTAG 3696 0.4169 METVVTRSERRGRKRRRIDVQTVAVDGQAGDETKRARSNVLVGQYVLKEFEGNGIFLGKIMYYDGGLYRVDYEDGDCEDLESSELCSFIMEDAYFDDDLTERRKKLDELILKRKNISAMKLVESGNGVERVEASLVSDLSDVPIHEVDSVELDGEADSSSDSCEYARDREFGSDAETPMVPPPQLPPSSGNIGVPEEYVSHLFSVYGFLRSFSIRLFLSPFALDDLVGSLNCTVPNTLLDAIHVALLRVVRRHLEALSSSGLELASKCLWCIDWSLVDTLTWPVYLVQYLTIMGYTKGLELKGFYADVLDREYYTLSAGRKLIILKILCDDVLDSEELRAEIDMREESEIGIDPDSVTNFPPENGPRRVHPRYSKTSACKDQEAMQIIAESHETKLSRNSNSLGFKTTELDVNAADDQDVNGDECRLCGMDGTLLCCDGCPSVYHSRCIGVSKMFIPDGPWFCPECTIDKIGPTITVGTSLRGAEVFGIDAFEQVYLGTCNHLLVLKASIDAETCVRYYHQNDILKVIQVLYSSEQYAALYSGICKAILKYWEIKENVLLVPEIVEMDPTLANKKDGATIRPLSLPPPGIVNQKVLDTVVEGENCLSSITESNIKNVAVSCIETSWDTMTRTGYLGLQRNSDTTAKQICPLMIPKLPEQIKMESTMSTSSTSQQVDRSDLTQQSLADRSSGMDFATCLSGNSNSSNSGYMTGVCFPENLSSQSKSGNLRIVGRVKRNTVDDCTYMGAFFKSYAYINNYAHGDFAASAAANLAILSSEENRVSEVQASSNPRKVLSANISLQVKAFSSVANRFFWPNSEKKLVEVPRERCGWCLSCKASVSSKRGCLLNSAALNAIKGAMKILAGIRPLKNVEGNLPSIATYILYMEESLSGLVVGPFLSATCRKQWRRRVEQASTYSVIKALLLELEENIRIIALSGDWVKLVDNWLVEASVTQSATSAIGSTQKRGPGRRSKRLSGVSEVADDRCLDKDFTWWRGGKLSKHIFQRGILPRSAVKKAARQGGSRKIPGICYAEVSEIPKRSRQVIWRAAVEMSKNASQLALQVRYLDLHIRWGDLVRPEQNIQDVKGPETEASAFRNAFICDKKIVENKIRYGVAFGNQKHLPSRVMKNIIEVEQIQDGNDKYWFYEMRIPLYLIKEYEESVETLLPSDKQPSNVLSKLQRLQLKASRRDIFSYLMRKRDNLDKCSCASCQLDVLLGSAVKCGACQGILIT* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1319 1231 PANTHER PHD FINGER FAMILY PROTEIN 36 1226 - -
Vvi6g1319 1231 Pfam DDT domain 197 253 IPR018501 -
Vvi6g1319 1231 Pfam PHD-finger 425 467 IPR019787 -
Vvi6g1319 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 489 IPR013083 -
Vvi6g1319 1231 MobiDBLite consensus disorder prediction 153 181 - -
Vvi6g1319 1231 SUPERFAMILY FYVE/PHD zinc finger 410 472 IPR011011 -
Vvi6g1319 1231 ProSiteProfiles Zinc finger PHD-type profile. 422 469 IPR019787 -
Vvi6g1319 1231 SMART PHD_3 424 467 IPR001965 -
Vvi6g1319 1231 MobiDBLite consensus disorder prediction 353 372 - -
Vvi6g1319 1231 MobiDBLite consensus disorder prediction 160 174 - -
Vvi6g1319 1231 CDD PHD2_CHD_II 425 466 - -
Vvi6g1319 1231 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 306 343 IPR028942 -
Vvi6g1319 1231 SMART testlast3 196 256 IPR018501 -
Vvi6g1319 1231 MobiDBLite consensus disorder prediction 663 683 - -
Vvi6g1319 1231 ProSitePatterns Zinc finger PHD-type signature. 425 466 IPR019786 -
Vvi6g1319 1231 ProSiteProfiles DDT domain profile. 196 256 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1319 Vvi-Chr6 18927671 18942033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1319 286 586 EF-hand Containing Proteins AT5G22760 49.338 6.62e-86 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vvi6g1319 DDT 6.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1319 - - vvi:100243147 2378.98