Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1303 ATGGCGGAGGATCGGAACGGTGATCTGAGCGAGGCCAGTGACTATACGTCGGAAGACGAAGGAACGGAAGATTACAGGCGAGGAGGGTACCATGCGGTTCGGATCGGGGATACCTTCAAGAATGGGCGCTATGTGGTGCAGGCCAAGCTCGGTTGGGGACATTTCTCAACCGTGTGGCTCGCTTGGGATACTCAAAAATCCAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAGATGACAAGAGATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCTGGGCCAAATGGGCAACATGTGTGTATGGTTTTTGAGTACTTGGGGGATAATCTTTTGACCCTTATCAAGTATGCTGATTACCGAGGAACTCCCCTACACATGGTTAAAGAAATTTGTTTTCATATTTTAGTAGGCCTGGATTACTTGCATCACCAGCTTTCAATTATACACACTGATTTGAAACCAGAGAATGTATTACTTTTATCCATGATTGATCCATCAAAAGACCCAAGAAAATCGGGTGCTTCTCTTATCCTTCCAACTAGCAGGGATAAAATTGTATCTGAGCCTGCAGCTTCAAAAGATACTAAGAATATGAATGGGGATTTAACAAAGAACCAGAAAAAGAAAATCAGGCGAAAGGCTAAGCGGGCGGCTCAAGGTTGCATGGGAAAAGAAGCTTCTGACGATCCTGAGCTAGATGCCAAAGCTCCTGATTCAGAAGATTCAAATAATGATGCAAACTCAAATGGGGATTCTGTTGAGGAGCAACAAAATAGTTCTGTGATAAAGAGTAGCTCAGTGAACACTGATGATGTAAAGGATGTCCGACGAGAAAATCAGGGTCGTAGGAGAGGGAGCCGTTCCACTAGGCAGAAGCTGTTGGCTGAGGTTGATCTGAAGTGCAAATTGGTTGACTTTGGGAATGCTTGTTGGACGTATAAACAATTTACAAATGATATTCAGACAAGGCAATATAGGTGTCCAGAGGTTATCCTTGGATCTAAATATTCAACTTCAGCTGATCTATGGTCCTTTGCTTGCATTTGTTTTGAGCTGGTAACTGGAGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCACTTGGCGCTGATGATGGAGCTTCTTGGAATGATGCCGCGCAAGATTGCATTAGGTGGTCGCTATTCCAGGGACTTCTTCAACAGATATGGGGATTTAAGGCACATCCGTCGGCTGCGATTTTGGCCTCTTAATAAGGTTCTTACAGAAAAGTATGAATTCAGCGAGCAAGATGCAAATGATATTGCTGACTTCCTTGTTCCCATACTTGATTTTGTCCCTGAAAAGAGACCAACTGCGGCTCAGTGCCTTACCCATCCATGGATTAATGCTGGCCCTCGACTTCGTGAGCCCTCCATTGCTAGCCTTCCCAAGGCCACAGATGGTGGTGTTTCTGAGAAGAGGGAGAGGGATGAGAGGGAGGCCATGGAGGTTGGAGTGGGGAATATAGCTATTGATGGACCTTCGAAGTCAGACAAAGAACCCCAATCTATACAAAAACTACAGAAACAGAGCTAG 1647 0.4457 MAEDRNGDLSEASDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQAKLGWGHFSTVWLAWDTQKSKYVALKVQKSAKHYTEAAMDEITILKQIAEGDPDDKRCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYADYRGTPLHMVKEICFHILVGLDYLHHQLSIIHTDLKPENVLLLSMIDPSKDPRKSGASLILPTSRDKIVSEPAASKDTKNMNGDLTKNQKKKIRRKAKRAAQGCMGKEASDDPELDAKAPDSEDSNNDANSNGDSVEEQQNSSVIKSSSVNTDDVKDVRRENQGRRRGSRSTRQKLLAEVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLTEKYEFSEQDANDIADFLVPILDFVPEKRPTAAQCLTHPWINAGPRLREPSIASLPKATDGGVSEKRERDEREAMEVGVGNIAIDGPSKSDKEPQSIQKLQKQS* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1303 548 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 13 509 - -
Vvi6g1303 548 ProSiteProfiles Protein kinase domain profile. 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1303 548 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Vvi6g1303 548 SUPERFAMILY Protein kinase-like (PK-like) 39 495 IPR011009 -
Vvi6g1303 548 Gene3D Transferase(Phosphotransferase) domain 1 127 486 - -
Vvi6g1303 548 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g1303 548 MobiDBLite consensus disorder prediction 192 313 - -
Vvi6g1303 548 CDD STKc_SRPK 33 485 - -
Vvi6g1303 548 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Vvi6g1303 548 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1303 548 Pfam Protein kinase domain 319 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1303 548 FunFam CMGC/SRPK protein kinase 30 129 - -
Vvi6g1303 548 FunFam Serine/threonine-protein kinase SRPK-like protein 315 485 - -
Vvi6g1303 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vvi6g1303 548 MobiDBLite consensus disorder prediction 265 292 - -
Vvi6g1303 548 MobiDBLite consensus disorder prediction 293 313 - -
Vvi6g1303 548 SMART serkin_6 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1303 548 MobiDBLite consensus disorder prediction 250 264 - -
Vvi6g1303 548 MobiDBLite consensus disorder prediction 505 520 - -
Vvi6g1303 548 MobiDBLite consensus disorder prediction 495 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1303 Vvi-Chr6 18703407 18720201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1303 1 533 EF-hand Containing Proteins AT5G22840 69.871 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vvi6g1303 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1303 K08832 - vvi:100260164 1078.93