Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1302 ATGTCTCGCCGTGGTGGTGCTGGTGGGCGGAGATCGGATTCTCGCCGCGATCAGACGTCTCAGGCTCCTGGTCCATCGTTTAACAGAGGCGGGGAAGGAGGGAGGGGCGGGGGAGGAGGGAGGGGCGGGGGAGGAGGGAGAGGTGGGGGAGGAGGGAGAGGCAGGGGTTCTGGCGCCGCTGCTGCCGGTGGTTCAAGACCTGCTTCGGAGCCTCACTCGCCGGCGGCTTTTCCGCCATTGGCTTCTCCATCGCCGTCTGCTTCAACCTCTACAGCGTCTCTGAGCCAAAAGTTCGATCAGAGTCTCACATTGCAGTCTCCGGCTCCGGTTCGCCGTCAGCCTTCTGATCCTGTTCGACCTCAGCCTCAGCCTCATCCTCAGCCTCCCCCTCCGGTTCAGGCTCAGCCTACGCCTCCTGTTCCGACTCAGCCTCAGCCTTCGTCTTCGTATCAGGCTTCGTCTTCATCTCAGGCAACAGGGGTTGAGGTGCCGCCTTCGACGTCGAAGGCGATTACGTTCCCAAGGAGGCCGGGATATGGAACAGTAGGAAGAAAATGTAAGGTTCGAGCAAATCATTTTCAAGTACAAGTGGATGATAGAGAATTCTGTCATTATGATGTTACAATAACTCCTGAGGTAATGTCAAAGACTCTAAACCGGGAAATAATAAAGCAACTTGTTGACTTATACAAGGTGTCACATTTGGGTAAACGTAGTCCGGCATATGATGGCAGTAAGAGCCTGTATACAGCAGGTCCATTGCCCTTTACTTCAAAAGAGTTTGTGGTTAAGCTAGTTAAAACAGATGATGGGGCTGGTCCAAGAAGGGAACGTGAATTTAAGGTGGCTATTAAATTGGCTTCCAAGGGTGATTTATATCAGCTACAACAGTTTTTGTGTGGCAGACAACTCAGTGCTCCCCAAGAGACCATACAAATTCTTGATGTGGTTCTTAGAGCATCACCATCTGAAAAATATACTGTTGTGGGGCGGTCATTTTTCTCTACTCAATTGGGGAGAAAAGGTGAGCTTGGTGATGGCTTAGAGTATTGGAGAGGCTACTATCAAAGTCTTCGCCCAACCCAAATGGGACTCTCCTTTAATATTGATGTGTCAGCGAGATCTTTCTATGAGTCTATTCTTGTGACTGACTTTGTTGCAAAACATTTGAAGCTTAGAGATGTATCAAGAGCTCTGTCTGATCAGGACCGTATTAAGGTAAAGAAAGCCTTGAAGGGAGTTAAGGTACAACTCACTCATAGGGAGTTTGCTAAACGTTACAAAATTGCTGGTGTCTCAAGTCAACCAACGAACCAATTGATGTTTACCCTTGATGACGAGGCAACAAGAGTGTCAGTTGTTCAATACTTCCGCCAAAAGTACAATATTGTACTCAAATACCCCTCTTGGCCTTCTCTCCAAGCTGGGAGTGACTCGAAACCTATTTATTTACCCATGGAGGTCTGCAAGATTGTTGAGGGCCAAAGATACACAAGGAAATTGAATGATAGGCAGGTAACTGCTCTGTTAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAGATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTTGGCATTCGTATAAATGAGGAACTTACATTGGTTGATGCCCGTGTTTTGCCGCCTCCAATGCTTAAGTATCATGACAGTGGGCGAGAAGCAAAGGTTGATCCACGGGTGGGGCAGTGGAACATGATAGACAAGAAAATGGTAAACGGTGGAACAGTGCAATTCTGGACATGTTTGAACTTCTCTTTTAGAGTACATCAAGATTTGCCATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAAATTGAGAAGGTTCTAGTAGACGTTCACAAGCAGTCTATGGCCAAACTTGCAAGCATGGGACAAAATGGGAAACAACTCCAGCTGCTGATAATTATTCTACCTGATGTAACTGGGTCATATGGTAAAATCAAACGAATATGTGAAACGGAGTTGGGAATTGTTTCGCAATGCTGTCAGCCTTCCCAAGCTTCAAAACTTAATAAGCAGTATTTTGAAAATGTTGCACTGAAGATAAATGTGAAGGTTGGGGGCCGGAACACTGTACTTTTTGATGCAATTCAAAGGAAAATTCCTCTGGTGAGTGATCTTCCAACAATAATCTTTGGTGCTGATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTGTCTGCTCAGCACCACCGTGAAGAAATTATTCAGGATCTCTATAAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTGGTGCAGAAAAGGCACCATACACGCTTTTTCCCTTCAGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAGGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCTCAATAGCCATGCTGGAATTCAGGGCACCAGCAGGCCAACACATTATCATGTGTTATATGATGAGAACAAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACACGTATGCAAGGTGCACCCGCTCTGTCTCCATAGTTCCCCCTGCTTATTATGCCCATTTAGCAGCCTTCCGGGCTCGATATTATATTGAGGGTGATACATCTGATTCTGGATCTGGAAGTGGGGACAGGAGTACAAGGGAGAGGAACCTGGAGGTTCGGCTCCTGCCTGCAGTCAAAGAAAATGTTAAAGACGTGATGTTTTACTGCTGA 3099 0.4605 MSRRGGAGGRRSDSRRDQTSQAPGPSFNRGGEGGRGGGGGRGGGGGRGGGGGRGRGSGAAAAGGSRPASEPHSPAAFPPLASPSPSASTSTASLSQKFDQSLTLQSPAPVRRQPSDPVRPQPQPHPQPPPPVQAQPTPPVPTQPQPSSSYQASSSSQATGVEVPPSTSKAITFPRRPGYGTVGRKCKVRANHFQVQVDDREFCHYDVTITPEVMSKTLNREIIKQLVDLYKVSHLGKRSPAYDGSKSLYTAGPLPFTSKEFVVKLVKTDDGAGPRREREFKVAIKLASKGDLYQLQQFLCGRQLSAPQETIQILDVVLRASPSEKYTVVGRSFFSTQLGRKGELGDGLEYWRGYYQSLRPTQMGLSFNIDVSARSFYESILVTDFVAKHLKLRDVSRALSDQDRIKVKKALKGVKVQLTHREFAKRYKIAGVSSQPTNQLMFTLDDEATRVSVVQYFRQKYNIVLKYPSWPSLQAGSDSKPIYLPMEVCKIVEGQRYTRKLNDRQVTALLRATCQRPSEREGNIQEMVRKNNFSTDRVVRDEFGIRINEELTLVDARVLPPPMLKYHDSGREAKVDPRVGQWNMIDKKMVNGGTVQFWTCLNFSFRVHQDLPSGFCRELVNMCVSKGMVFNPNPLLPIQSAHPNQIEKVLVDVHKQSMAKLASMGQNGKQLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPSQASKLNKQYFENVALKINVKVGGRNTVLFDAIQRKIPLVSDLPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQHHREEIIQDLYKTTADPHKGVTHGGMIRELLIAFRRSTGYKPSRIIFYRDGVSEGQFSQVLLHEMDSIRKACASLEEGYLPPVTFVVVQKRHHTRFFPSDHRSRDLTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADILQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDTSDSGSGSGDRSTRERNLEVRLLPAVKENVKDVMFYC* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1302 1032 Pfam PAZ domain 405 509 IPR003100 GO:0005515
Vvi6g1302 1032 Gene3D - 742 1032 IPR036397 GO:0003676
Vvi6g1302 1032 Pfam N-terminal domain of argonaute 184 318 IPR032474 -
Vvi6g1302 1032 ProSiteProfiles Piwi domain profile. 673 993 IPR003165 GO:0003676
Vvi6g1302 1032 SMART Piwi_a_2 673 993 IPR003165 GO:0003676
Vvi6g1302 1032 SMART DUF1785_2 327 379 IPR014811 -
Vvi6g1302 1032 Pfam Mid domain of argonaute 577 655 IPR032473 -
Vvi6g1302 1032 Gene3D - 558 735 - -
Vvi6g1302 1032 Pfam Argonaute linker 2 domain 519 566 IPR032472 -
Vvi6g1302 1032 FunFam Protein argonaute-2 373 498 - -
Vvi6g1302 1032 Gene3D paz domain 374 497 - -
Vvi6g1302 1032 MobiDBLite consensus disorder prediction 146 166 - -
Vvi6g1302 1032 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 151 994 - -
Vvi6g1302 1032 Pfam Piwi domain 675 992 IPR003165 GO:0003676
Vvi6g1302 1032 ProSiteProfiles PAZ domain profile. 380 493 IPR003100 GO:0005515
Vvi6g1302 1032 CDD PAZ_argonaute_like 382 492 - -
Vvi6g1302 1032 MobiDBLite consensus disorder prediction 113 145 - -
Vvi6g1302 1032 SUPERFAMILY PAZ domain 376 533 IPR036085 GO:0005515
Vvi6g1302 1032 SUPERFAMILY Ribonuclease H-like 669 993 IPR012337 -
Vvi6g1302 1032 MobiDBLite consensus disorder prediction 1 17 - -
Vvi6g1302 1032 FunFam protein argonaute 10-like 741 1032 - -
Vvi6g1302 1032 SMART PAZ_2_a_3 384 513 IPR003100 GO:0005515
Vvi6g1302 1032 MobiDBLite consensus disorder prediction 82 110 - -
Vvi6g1302 1032 Pfam Argonaute linker 1 domain 329 378 IPR014811 -
Vvi6g1302 1032 CDD Piwi_ago-like 541 992 IPR045246 -
Vvi6g1302 1032 FunFam Argonaute 10 558 735 - -
Vvi6g1302 1032 MobiDBLite consensus disorder prediction 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1302 Vvi-Chr6 18665627 18674795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1302 123 1032 Eukaryotic Initiation Factors Gene Family AT1G48410 61.920 0.0 1151