Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1289 ATGTTGGTGCCACCATGGGTGGAGAGTTTCTTGTCTACTCGGTTCTACAGCGGCTGCACTAAGCATCCCGACGCCGCACACAAGGAATGCAACATGTTCTGCATCGACTGCAGAAGCGACGCCTTTTGCAGCCACTGCCGAATCTCACTACACTCGGGTCATGCCGTAATTCAAATACGACGATCGTCATATCATAATGCTGTGAAGGTGATGGAAGTTGAGAAGCTTTTGGATGTAAGTGGGGTTCAGTCGTACGTGGTCAACAAGTGTAAAGTAGTATATCTGGACCGGAAGACACAGGTGAAGCCTAGTAATGGTAATGCCTCTCATGCATGTGAAGTCTGTCGTCGAGGTCTCTTGACCAACTTCCGTTTCTGTTCACTAAGATGCAAGGTTTGTTAA 402 0.4801 MLVPPWVESFLSTRFYSGCTKHPDAAHKECNMFCIDCRSDAFCSHCRISLHSGHAVIQIRRSSYHNAVKVMEVEKLLDVSGVQSYVVNKCKVVYLDRKTQVKPSNGNASHACEVCRRGLLTNFRFCSLRCKVC* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1289 133 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 131 - -
Vvi6g1289 133 SUPERFAMILY B-box zinc-binding domain 19 62 - -
Vvi6g1289 133 Pfam PLATZ transcription factor 60 132 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1289 Vvi-Chr6 18422781 18423262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vvi6g1289 PLATZ 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1289 - - vvi:100263681 281.952