Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1285 ATGGCGAAGGGTACTGATTCAGAGGAGTTTGTGGTGTTGTCTCGGGTTCGGCCGGGCTGCAAACGGGAGTTTGCCTTTGCAGTGAAGGCTCAATCAGCGATCGCTGGATCTTTGGGCCGGACTCGGACTCGGAACGATAGGGGTGGGCTTTGGGGCAATGGGGGTTCAGAGATTTCGAATAATAAGAGGCAAAAGAGCTCGGTTTCCAACTCAGAGAAAAATAATGCGGAGGAAAGATCTGCTGAAGATGGAATCAGGAGCAATGAAGCAGATTCGATGGACAATGAGGCGGTGAGAAGTGGGGACGCGGAGCAGGGGAACCATCCGGCGGATAATCCGATGCATACTGCCGGTGTTGGTGAACTTAAGAGCTGTCCGGGGGGCGAAGAGGAGTTTAAGGATGATACGCCGGCTCCAATGCATAGAGAGGATGCAGAGATTAGTGAAACTCAAAATGCCGATGTAGTGGAGAATGCAACTTCGGATCAACGGCCGAGGAGAGTTTCTGAAACTGATTTGATGCCCAATGCCGATACTATGGAGATCTCTGCTGTCAACAATGGTGAGGAGAATACAGGGACGAAGAGGAGTAGTGGCTTGGTGCCTCGGGTTCCAAGGCGGTTCCCTGCAAAATTAAAGGAGCTTCTTGACACTGGTATTCTCGAGGACTTACCTGTGCAGTACATTCGAGGCTCAAGAACGAGAGGAAGTGGAGAATCAGGGCTTCGGGGTGTGATAAAGGGCTCTGGGATCCTCTGCTCTTGCAATTCTTGCAAGGGAACAAAAGTTGTCACACCCAACTTATTCGAGCTGCATGCTGGTAGTTCAAATAAACGTCCCCCTGAGTACATTTACCTTGAGAACGGGACTTCCCTCCGCGGTGTAATGAATGCATGGAAAAATGCTGCATTGGACTCTTTGGATGAAGCCATAAGAGTGGCCATTGGTTGTTCAATGATAAAGAAATCCACATTCTGTCTGAACTGTAAAGGTCGTATTTCTGAAGCTGGCATTGGGAATTCAAAGGTTTTATGTATGCTCCATGAACTCCTTGTGTCAAAGTGCAGCTCATCAGGAAGTAAGAGTTATGGGAGGGTAACTAAAAAAGATCTGAGCTTGCATAAATTAGTTTTTGGAGAAAATGGCCTGCCTGAAGGAACAGAAGTGGGTTATTATGTTCGTGGACAGCAATTGCTGGTTGGCTACAAAAGGGGTTCTGGAATCTTTTGTACTTGCTGTAACTCTGAGGTCAGTCCATCACAATTTGAGGCTCATGCTGGTTGGGCATCACGCCGCAAACCTTACCTGCATATTTACACATCTAATGGGGTGTCTCTCCACGAATTCTCAATCTCTCTATCAAGAGGCAGAGAGATTTCTGTCAGTGATAATGATGATCTCTGCAGCATATGCCTTGATGGAGGAAACCTTTTGTGTTGTGATGGATGCCCAAGGGTCTTTCACAAAGAATGTGTGTCACTGGCAAACATCCCCAAGGGCAAGTGGTTCTGCAAATTTTGCAATAATATGTTGCAAAAAGAAAAATTTGTAGAACATAATGCCAATGCTGTGGCTGCAGGAAGGGTAGCAGGTGTGGACCCAATCGAACAGATTACAAAACGATGCATTCGCATTGTAAACACTCAAGTTGATGAAATGGGAGGATGTGCCTTGTGCAGAAGGCATGAATTCAGCAGATCCGGGTTTGGTCCTCGCACTGTTATGCTTTGTGATCAGTGTGAGAAAGAATTCCATGTTGGGTGCTTAAGAGAGCATGACATGGATGACCTAAAGGAAGTGCCTAAAGGCAAATGGTTTTGTTGCCATGACTGCAAGAGAATTAATTCTTCTTTGCAGAAGTTGGTTGTTCATGGAGAAGAGGAGCTTCCACATAATGTGTTGACGACTATAAAGGAAAAATATGGAAGAAATGGTTCTGCTTGCAGTAAGGATCCTGATATAAAATGGAGGCTCATTTGTGGGAGAAGGGCTTCTTCTATTGAAGCGGGATCATTGCTTTCTCAGGCTCTATCCATATTTCATGAACAATTTGATCCAATTGCTGATGCTGCAGGCCGAGACCTTCTACCTGACATGGTTCATGGCAAAAGCACAAGGGAGTGGGATTTTGGAGGCATGTACTGTGCCATATTAACAATTAGCTCCCAAGTTGTATCAGCAGCTGCCTTCCGAATATTTGGAAAGGAAGTTGCAGAACTGCCTCTTGTGGCTACACGGAGTGATTGCCAAGGCCAGGGTTACTTCCAGACCCTGTTCTCTTGCCTTGAGGGGCTGCTTGGTGTTCTCGAGGTGAGGAGTCTTGTGCTTCCTGCTGCTGAAGGAGCAGAGTCCATATGGACAAACAAGTTTGGTTTTAACAAGGTGACACAAGAGCAGCGGAACAATTTCAGAAGAGATTACCAGATGGTGACTTTCCAAGGGACATTGATGCTGCAGAAGTTGGTTCCTAGGTGA 2475 0.4646 MAKGTDSEEFVVLSRVRPGCKREFAFAVKAQSAIAGSLGRTRTRNDRGGLWGNGGSEISNNKRQKSSVSNSEKNNAEERSAEDGIRSNEADSMDNEAVRSGDAEQGNHPADNPMHTAGVGELKSCPGGEEEFKDDTPAPMHREDAEISETQNADVVENATSDQRPRRVSETDLMPNADTMEISAVNNGEENTGTKRSSGLVPRVPRRFPAKLKELLDTGILEDLPVQYIRGSRTRGSGESGLRGVIKGSGILCSCNSCKGTKVVTPNLFELHAGSSNKRPPEYIYLENGTSLRGVMNAWKNAALDSLDEAIRVAIGCSMIKKSTFCLNCKGRISEAGIGNSKVLCMLHELLVSKCSSSGSKSYGRVTKKDLSLHKLVFGENGLPEGTEVGYYVRGQQLLVGYKRGSGIFCTCCNSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHEFSISLSRGREISVSDNDDLCSICLDGGNLLCCDGCPRVFHKECVSLANIPKGKWFCKFCNNMLQKEKFVEHNANAVAAGRVAGVDPIEQITKRCIRIVNTQVDEMGGCALCRRHEFSRSGFGPRTVMLCDQCEKEFHVGCLREHDMDDLKEVPKGKWFCCHDCKRINSSLQKLVVHGEEELPHNVLTTIKEKYGRNGSACSKDPDIKWRLICGRRASSIEAGSLLSQALSIFHEQFDPIADAAGRDLLPDMVHGKSTREWDFGGMYCAILTISSQVVSAAAFRIFGKEVAELPLVATRSDCQGQGYFQTLFSCLEGLLGVLEVRSLVLPAAEGAESIWTNKFGFNKVTQEQRNNFRRDYQMVTFQGTLMLQKLVPR* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1285 824 SUPERFAMILY FYVE/PHD zinc finger 546 612 IPR011011 -
Vvi6g1285 824 ProSitePatterns Zinc finger PHD-type signature. 468 507 IPR019786 -
Vvi6g1285 824 Pfam Tify domain binding domain 244 297 IPR032308 -
Vvi6g1285 824 Pfam Tify domain binding domain 401 448 IPR032308 -
Vvi6g1285 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 543 IPR013083 -
Vvi6g1285 824 CDD PHD1_AIRE 467 507 - -
Vvi6g1285 824 Gene3D - 654 824 - -
Vvi6g1285 824 Pfam PHD-finger 468 509 IPR019787 -
Vvi6g1285 824 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 708 800 IPR016181 -
Vvi6g1285 824 SMART PHD_3 555 612 IPR001965 -
Vvi6g1285 824 SMART PHD_3 467 508 IPR001965 -
Vvi6g1285 824 ProSiteProfiles Zinc finger PHD-type profile. 465 510 IPR019787 -
Vvi6g1285 824 SUPERFAMILY FYVE/PHD zinc finger 460 513 IPR011011 -
Vvi6g1285 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 552 614 IPR013083 -
Vvi6g1285 824 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 662 822 IPR000182 GO:0016747
Vvi6g1285 824 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 552 614 - -
Vvi6g1285 824 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 454 531 - -
Vvi6g1285 824 PANTHER AUTOIMMUNE REGULATOR 59 820 - -
Vvi6g1285 824 MobiDBLite consensus disorder prediction 75 98 - -
Vvi6g1285 824 MobiDBLite consensus disorder prediction 31 167 - -
Vvi6g1285 824 MobiDBLite consensus disorder prediction 126 149 - -
Vvi6g1285 824 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1285 Vvi-Chr6 18359293 18369317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1285 361 822 PHD Transcription Factor Family AT2G36720 57.759 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi6g1285 TDBD 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1285 - - vvi:100260233 1627.45