Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1284 ATGTTGTATCGGCCCAAATCCTGCTCTGATTTTTTATACATCTACTACATGGTTTTGAGAAGTCCCTTCCTTGTTTACGGTTCTTCAACATGGAAAATTTTCTTTACAATGGTTTCTAATAAGTCCTCTTTTGGGTTTGATTTGGGGGTTATGGAGAAGGGTAGTGATTCAGAGGAGTTTGTAATGTCTCGAATTCGGCCTGGCTTCAAACGGGAGTTTGCCTTTGTGGTGAAAGCTCAATCAATGATTGGTGGTTCTTTAAGTCTAGGTCGGACTCGAACTCAAACTCAAACTAAAAAAGATAGAGGTGGGCCTTCAAGGAATAGGGTTTTAGAGAACTCAATTAAAAAGAGGCAAAAAAGTTCCAGTTTGGATTCACAAAAAAATAATGTGGAGGAAAGGTTTCCTGAAGATCGAGTTAGGAGCAATGATGGCAAATCGATGGACAACAAGGTGGTGAGAAGTGGGCAAGGGGAGCAGGGGAATGATTCGACGGATAATCCAATGCAAATCAGTCGTGATAATGAATCCATGAGCGGTCCTGCAGAAGAAGAGGAGTTGGATTATCTTCCAACTTCCACGCTTAGAGAGGGGGTAAAGACAAGTAGAACTCCAAGTGTGGATGGGCTGAAGAAAGCACCATCAAGTCAAAATCAAAGGAGGGTTTCTCGAGTTACTTTGAAGCCTAAAGCCAATGCTATGAAGATATCTGTTGTCAACAATGGTGAGAAGAATGTGGTGAAAATGGGGAGTAGTGCATTGGTGCCTTCAACTCTAAAGGGGTTTCCCACAAAATTAAAGGAGCTTCTTGACACGGGTATTCTTGAGGACTTACCTGTGCAGTACATTCGAGGCTTAAGAAGAAAAGAAAATGGGGAATCCGGGCTTCATGGGGTGATAAAAGGCTCTGGGATCCTCTGTTATTGTGATACATGCAAGGGAACAAATGTGGTTACGCCAAATGTATTTGAGCTGCATGCTGGTAGTTCAAATAAACGTCCCCCAGAGTACATTTACCTTGAGAATGGGAATACCCTTCGGAGTGTAATGACTGCATGCTCAAAGGCTACATTGAAGGCCTTGGATGAAGACATTAGAGTGGCAATTGGTTCATCCATAAAGAAATCTACATTTTGCTTCAATTGCAAAGGTTCTATTTCTGAAGTTGGCACCAGTGATTCACTGGTGTTATGCGAATCATGTGTGGGACTAAAGGAGTCTCACGCTAGCCCTGCTCAACCAACTGGTACTAGTGATAGGTCAACAAAAACAACGACTGTGTCCAAGTGCAGCTCATCAGGAAGTAAGAATTATGGGCGGGTAACTAAAAAAGATGTGGGCCTTCATAAGTTGGCTTTTGGGGAAAATGACCTGCCTGAAGGAAGTGAAGTGAGCTACTATGTTCGTGGAGAGAGATTGCTAAGTGGTCATAAAAAGGGTTGTCGAATCCTTTGTGGTTGCTGCAACTCCGAGGTCAGCCCGTCTCAATTTGAGGCCCATTCTGGTTGGGCTTCACGCAGAAAACCTTACCTGCATATTTACACATCTAATGGGGTTTCTCTTCATGAACTCTCACTATCTCTATTGAGAGGGAGGGAACCTTCTATCAACACCAACGATGAAATCTGCAGTATATGCCTAGATGGAGGGACACTGCTATGTTGTGATGGATGCCCAAGGGTGTTTCACAAAGAATGTGTCTCACTGGAAAACATCCCCAAGGGCAAGTGGTTCTGCAAATTTTGCCTTAATACATTGCAAAAGGGCAAATTTGTAGAACGCAACGCCAATGCAGTGGCTGCAGGAAGGATGGGTGGGGTTGACCCAATTGAACAAATTAGGAAACGATGCATTCGCATCGTAAAAAATCAAACCGATGAAGCAGGAGGATGTGCTTTGTGCAGAAGGCATGAATTCAGCACATCTGGGTTTGGTCCTCACACTGTTATGATTTGCGATCAGTGTGAGAAAGAATTCCATGTCGGATGCTTAAAGGCACATAATATAGATGATTTAAAGGTGGTACCCAAGGGGAAGTGGTTCTGTTGCCGTGACTGCAAAGACATTAATTCTTCTTTGCGGAAGATAGTGGTTCGTCAAGAAGAGGAACTTCCAGATGATGTTTTGAGGATTATAAAAAAAAGATATGGAAGAAAAGGTTCTGTTTGCAGTGGGAATCCTGATATAAAATGGAGGCTCCTTCATGGGAGACGGGCTTCTGCTACTGAAGCAGGATCATTGCTTTCTCAGGCTCTATCCTTATTTCATGTGAGTAGTTGTTGA 2283 0.4314 MLYRPKSCSDFLYIYYMVLRSPFLVYGSSTWKIFFTMVSNKSSFGFDLGVMEKGSDSEEFVMSRIRPGFKREFAFVVKAQSMIGGSLSLGRTRTQTQTKKDRGGPSRNRVLENSIKKRQKSSSLDSQKNNVEERFPEDRVRSNDGKSMDNKVVRSGQGEQGNDSTDNPMQISRDNESMSGPAEEEELDYLPTSTLREGVKTSRTPSVDGLKKAPSSQNQRRVSRVTLKPKANAMKISVVNNGEKNVVKMGSSALVPSTLKGFPTKLKELLDTGILEDLPVQYIRGLRRKENGESGLHGVIKGSGILCYCDTCKGTNVVTPNVFELHAGSSNKRPPEYIYLENGNTLRSVMTACSKATLKALDEDIRVAIGSSIKKSTFCFNCKGSISEVGTSDSLVLCESCVGLKESHASPAQPTGTSDRSTKTTTVSKCSSSGSKNYGRVTKKDVGLHKLAFGENDLPEGSEVSYYVRGERLLSGHKKGCRILCGCCNSEVSPSQFEAHSGWASRRKPYLHIYTSNGVSLHELSLSLLRGREPSINTNDEICSICLDGGTLLCCDGCPRVFHKECVSLENIPKGKWFCKFCLNTLQKGKFVERNANAVAAGRMGGVDPIEQIRKRCIRIVKNQTDEAGGCALCRRHEFSTSGFGPHTVMICDQCEKEFHVGCLKAHNIDDLKVVPKGKWFCCRDCKDINSSLRKIVVRQEEELPDDVLRIIKKRYGRKGSVCSGNPDIKWRLLHGRRASATEAGSLLSQALSLFHVSSC* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1284 760 MobiDBLite consensus disorder prediction 208 223 - -
Vvi6g1284 760 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 529 606 - -
Vvi6g1284 760 MobiDBLite consensus disorder prediction 149 177 - -
Vvi6g1284 760 Pfam PHD-finger 542 584 IPR019787 -
Vvi6g1284 760 SUPERFAMILY FYVE/PHD zinc finger 528 585 IPR011011 -
Vvi6g1284 760 Pfam Tify domain binding domain 298 353 IPR032308 -
Vvi6g1284 760 Pfam Tify domain binding domain 477 524 IPR032308 -
Vvi6g1284 760 SUPERFAMILY FYVE/PHD zinc finger 622 685 IPR011011 -
Vvi6g1284 760 MobiDBLite consensus disorder prediction 407 430 - -
Vvi6g1284 760 PANTHER AUTOIMMUNE REGULATOR 116 757 - -
Vvi6g1284 760 ProSitePatterns Zinc finger PHD-type signature. 543 582 IPR019786 -
Vvi6g1284 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 689 IPR013083 -
Vvi6g1284 760 ProSiteProfiles Zinc finger PHD-type profile. 540 585 IPR019787 -
Vvi6g1284 760 MobiDBLite consensus disorder prediction 410 430 - -
Vvi6g1284 760 SMART PHD_3 630 687 IPR001965 -
Vvi6g1284 760 SMART PHD_3 542 583 IPR001965 -
Vvi6g1284 760 MobiDBLite consensus disorder prediction 88 223 - -
Vvi6g1284 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 530 606 IPR013083 -
Vvi6g1284 760 CDD PHD1_AIRE 543 582 - -
Vvi6g1284 760 MobiDBLite consensus disorder prediction 95 123 - -
Vvi6g1284 760 MobiDBLite consensus disorder prediction 130 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1284 Vvi-Chr6 18344970 18357191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1284 440 756 PHD Transcription Factor Family AT2G36720 53.628 3.95e-116 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi6g1284 TDBD 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1284 - - vvi:100255152 1408.66