Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1279 ATGATTCCAGTGGGTACTTCTAACTGTTTCGTGAATGGATCGCAAGGGCTACAGATGTATGGAATGACTGCTGAAGGTTCGGTTTCTTCTTCTCTTGGAGGCAGCTCGGTTTTGGAGGCTCACTCCTGCTCTCTCGTCTACAGTTTCTCTATTCTCAAAGACAAGGTCCATCAGGTGCAATCCCTGATCAGCATCTTCGTCCCTCCCAATCAAGGCCAACCCGAGTCTATGGCCATGGCCGTGGCCGGCATGGGCAATTTGATTCAAGAAGTTATTGCAGCTGCATCTTCAATGATGTACAGTTGCCAGCAGATGGGTTATGGTGCAGCTCCAGGTAACAGTGGCACCAATCATGGATTGCCCCAGCAAGGCGTTGAGCTCTCAGATGGCAGGGTCTGCGGCGATACTGGTGTTGTCCAAATGGGAGAAGAAAGAGGGCAAGGATTCTATTCCAGTGATCAATCTCTTGACTGGTATGGCGATAACCATAACAACTCTAATACTAATGATCATAGTCGGACTATCATTGTCAGCAACAATGACAAGGTTGAATCGAGGGAATTGCCTCAAGGTTCAACCCAAATGAATGAAGGGTTGGGGGGAGTTTTGCCAAAGACTTTCGATATTGTAGAGTTGGATGCTGAAGATTTGTTAGCCAAGTACACACATTACTGCCAAATTTGTGGAAAAGGGTTCAAGAGAGACGCAAATTTGAGAATGCACATGAGGGCTCACGGGGATGAGTACAAGTCCAATGCTGCTTTAAGCAACCCCACGAAGAATATTGGAAGAGAGATGGAAAATAAAGACGATCTGATAAAATTGCCAAGGAAATACTCATGTCCGCAAGAAGGGTGCAGATGGAACCGGAAGCACGCCAAATTTCAGCCATTGAAATCAATGATATGTGTGAAGAACCATTACAAGAGAAGCCACTGCCCAAAGATGTACATCTGCAAGAGGTGCAACCAGAAACAGTTTTCGGTGTTGTCTGATCTGCGAACCCATGAGAAGCACTGTGGCGATCTCAAGTGGCTGTGCTCCTGCGGCACCACATTTTCTAGGAAAGATAAGCTTATGGGTCACGTTGCTTTGTTCGTTGGACACACTCCAGCCATCAATTCTATGTCAAAGCCAGTAAAGTTTTATCAAAATGCATCACGATTGCAATGA 1173 0.4604 MIPVGTSNCFVNGSQGLQMYGMTAEGSVSSSLGGSSVLEAHSCSLVYSFSILKDKVHQVQSLISIFVPPNQGQPESMAMAVAGMGNLIQEVIAAASSMMYSCQQMGYGAAPGNSGTNHGLPQQGVELSDGRVCGDTGVVQMGEERGQGFYSSDQSLDWYGDNHNNSNTNDHSRTIIVSNNDKVESRELPQGSTQMNEGLGGVLPKTFDIVELDAEDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKSNAALSNPTKNIGREMENKDDLIKLPRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLRTHEKHCGDLKWLCSCGTTFSRKDKLMGHVALFVGHTPAINSMSKPVKFYQNASRLQ* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1279 390 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Vvi6g1279 390 FunFam Zinc finger protein 574 222 247 - -
Vvi6g1279 390 SMART c2h2final6 279 312 IPR013087 -
Vvi6g1279 390 SMART c2h2final6 317 339 IPR013087 -
Vvi6g1279 390 SMART c2h2final6 223 245 IPR013087 -
Vvi6g1279 390 SUPERFAMILY beta-beta-alpha zinc fingers 222 247 IPR036236 -
Vvi6g1279 390 Gene3D Classic Zinc Finger 206 276 - -
Vvi6g1279 390 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 36 377 IPR044300 GO:0010044|GO:0010447
Vvi6g1279 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Vvi6g1279 390 Pfam C2H2-type zinc finger 223 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1279 Vvi-Chr6 18312413 18313585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1279 42 380 C2H2 Transcription Factor Family AT5G22890 50.712 1.12e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1279 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1279 - - vvi:100244865 790.801