Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1277 ATGGGGTCTAGCGATCATACGCAGATTGTTAAGGGCAAGCGCACCAAGCGGCAACGGACTTTGTCCCCGTTTGGGGTGTTGGTCACATCGAGCTCATCCAGTGGTGGTGGCGGAGGGGGAGGTGGAGGTGGAGGTGGCGGTGGGGATTATTCTTCGATTTCTTCTCCTACGTCCTCTGGTGAGGTTTTGGAGAGCACCGAGGAGGAGGAAGACATGGCTAATTGCTTAATTCTCTTGGCGCAAGGCCTGGGTCCAAGGCAGATTGAAGAGGGTGGTGCCGTGGAAAAGTTAAGCAGTCCAAGTTTCACGGAGATGGCCACTACAACTGCCGGAAAGGCTGGTTTCTACGTCTATGAGTGCAAGACATGCAATCGGACTTTCCCTTCTTTTCAAGCGCTGGGTGGGCATAGAGCGAGTCACAAGAAGCCTAAGGCCGTGGTTGAAGAGAAGAAAGGGCCGGCCGCCACCGCCTCATGGGACGATGACTACTATGAAGAAGGGCAATTCAATAAGATTAGCCCTCCTCTCTCTCTCCAAATAGGTAACAACAAAGCTTTACACAGTAGCAACAAGTCTAAGGTCCATGAATGTTCGATATGCGGGTCAGAATTCTCCTCCGGTCAAGCCTTGGGAGGCCACATGCGGCGACACAGGAGTAACACAAGCACTCGAATCACCATGAGTATGGACGCAGGCAAGATGGATTCCCATGATCACCACAAGAAGGAGCCGAGGAACGTCCTACCGTTGGATCTCAACCTTCCAGCCCCGGAGGACGAACTCCACCACCGGGACTCAAAGTTCCAGTTCACCTCCAACCAACAACACCTTGTCTTCTCGGCACCGGCCTTGGTGGACTGCCATTACTAA 870 0.5322 MGSSDHTQIVKGKRTKRQRTLSPFGVLVTSSSSSGGGGGGGGGGGGGGDYSSISSPTSSGEVLESTEEEEDMANCLILLAQGLGPRQIEEGGAVEKLSSPSFTEMATTTAGKAGFYVYECKTCNRTFPSFQALGGHRASHKKPKAVVEEKKGPAATASWDDDYYEEGQFNKISPPLSLQIGNNKALHSSNKSKVHECSICGSEFSSGQALGGHMRRHRSNTSTRITMSMDAGKMDSHDHHKKEPRNVLPLDLNLPAPEDELHHRDSKFQFTSNQQHLVFSAPALVDCHY* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1277 289 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Vvi6g1277 289 SUPERFAMILY beta-beta-alpha zinc fingers 117 217 IPR036236 -
Vvi6g1277 289 SMART c2h2final6 195 217 IPR013087 -
Vvi6g1277 289 SMART c2h2final6 118 140 IPR013087 -
Vvi6g1277 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 222 IPR013087 -
Vvi6g1277 289 Gene3D Classic Zinc Finger 116 217 - -
Vvi6g1277 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Vvi6g1277 289 MobiDBLite consensus disorder prediction 22 37 - -
Vvi6g1277 289 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Vvi6g1277 289 Pfam C2H2-type zinc finger 117 143 - -
Vvi6g1277 289 Pfam C2H2-type zinc finger 194 219 - -
Vvi6g1277 289 MobiDBLite consensus disorder prediction 1 67 - -
Vvi6g1277 289 PANTHER ZINC FINGER PROTEIN ZAT5 19 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1277 Vvi-Chr6 18287579 18288448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1277 4 289 C2H2 Transcription Factor Family AT2G28200 46.474 1.54e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g1277 zf-C2H2_6 7.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1277 - - vvi:100246559 553.132