Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1273 ATGGATCGGAGGGATGCATCTGCAGGCACCTTGCCCAATGTTACCGACTTTGGTTTCCATGATTTCATCAATGAGCCTAACTTCGAGCAGTTGATTGAGCTCATCAGAGGAGAAAGCGCGGATTCTCTCGTGAAGTTCTGCCCCAATTATGATTGTGAGCACATGAATGGTTGTTTGGATGATAACCAGTTTGGCTCATCCGTGGGAGAATTGTTTGAGTTCGACCCTGCAACTGCAACGGTGTCGAATCCTGATTCGGTTATCGACTCACTGCCGAGCATTGATGGGGAGATGAAGGGAGGGGAAGAGATTGATGGGGAGGATTCATCCGGGAATACTACCACTACACCCACAAAGGGGACCAAGGTTGATAGGTCCAGAACTTTGATTTCAGAGAGGAGGAGAAGAGTTCGAATGAAGGAGAAGCTCTATGCGTTACGTTCCTTGGTTCCTAACATAACTAAGATGGACAAGGCCTCCATTGTTGGAGATGCTGTCCTGTATGTGCAGCAGCTGCAGATGCAGGCCAAGAAGCTAAAAGCTGAGATTGGGGGCCTTGAATCTTCGTTAGTGCTGGGAGCAGAGAGATATAATGGCTTAGTGGAAATCCCCAAGAAGATTCAAGTTGCACGCAGCCACCATCCCATGTGTGGGAAGATTTTTCAGATGGATGTGTTTCAAGTGGAGGAAAGAGGGTTCTATGTGAGATTGGCGTGCAACAGGGGAGAAAGGGTGGCGGTTTCGCTGTACAAGGCGCTTGAATCCCTCACCGGCTTCAGCATTCAGAGCTCTAACTTGGCCACATTTTCAGAGACTTTTGTATTGACATTTACTTTGAATGTTAGAGAATGTGATGAAAGCATGAACTTGCCAAATTTGAAGCTATGGTTAACTGGGGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACTTCCATCCTCCTAA 945 0.4709 MDRRDASAGTLPNVTDFGFHDFINEPNFEQLIELIRGESADSLVKFCPNYDCEHMNGCLDDNQFGSSVGELFEFDPATATVSNPDSVIDSLPSIDGEMKGGEEIDGEDSSGNTTTTPTKGTKVDRSRTLISERRRRVRMKEKLYALRSLVPNITKMDKASIVGDAVLYVQQLQMQAKKLKAEIGGLESSLVLGAERYNGLVEIPKKIQVARSHHPMCGKIFQMDVFQVEERGFYVRLACNRGERVAVSLYKALESLTGFSIQSSNLATFSETFVLTFTLNVRECDESMNLPNLKLWLTGALLNQGFEFKTLPSS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1273 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Vvi6g1273 314 MobiDBLite consensus disorder prediction 96 124 - -
Vvi6g1273 314 Pfam Helix-loop-helix DNA-binding domain 128 173 IPR011598 GO:0046983
Vvi6g1273 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 189 IPR036638 GO:0046983
Vvi6g1273 314 Coils Coil 169 189 - -
Vvi6g1273 314 MobiDBLite consensus disorder prediction 107 124 - -
Vvi6g1273 314 Gene3D - 116 189 IPR036638 GO:0046983
Vvi6g1273 314 SMART finulus 129 178 IPR011598 GO:0046983
Vvi6g1273 314 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 17 304 - -
Vvi6g1273 314 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 119 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1273 Vvi-Chr6 18252326 18253568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1273 11 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.903 1.58e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi6g1273 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1273 - - vvi:100262004 602.438