Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1272 ATGGAAGGTGGGGTTGATAGCAAATTGCTTGAAATTTGTGGAAGAGAGGTGTCTCTCACGGAGCTTGGATCTGGGAAATATGGGTGCACACATTACAGAAGGAGATGCAAGATTCGGGCTCCTTGTTGTGATGAAATCTTTGATTGTAGGCACTGCCATAATGAAGCCAAGAATTTACTGGAAACTGATCCTCATGATCGCCACGATATTCCAAGGCATGAAGTTAAAAAGGTCATTTGTTCTCTTTGTGACACAGAACAAGATGTCCAACAGAATTGCATTGCCTGTGGCGTTTGCATGGGGGAATACTTTTGCGAGAAATGCAAGTTCTTCGATGATGATGTTTCTAAGAATCAATATCATTGTGAAGAATGTGGAATCTGCAGAACCGGAGGGAAGGAGAATTTCTTTCACTGCAACAAATGTGGATGTTGCTATTCAAATATGATGAAGGATACACACCGATGTGTGGAAAGGGCAATGCACCACAATTGCCCTGTTTGCTTCGAGTTCCTTTTTGATACAACAAAAGATATTACTGTCTTACAATGTGGACACACTATACATTGGGAGTGTGTGAAGGAGATGCAACAGCATTTTTGCTACTCATGCCCTGTTTGCTCAAAATCCATTTGTGATATGTCCAGTTTGTGGGAAAAAATTGACCGAGAGGTTGCTTCAACTCCCATGCCTGAAATGTACCGAAAGAAGATGGTGTGGATCCTCTGCAATGATTGTGGGGCACAATCTGAAGTTCAATTCCATATTGTGGCTCATAAATGCCTGAGCTGCAAGTCCTACAACACTAGACAGATACAAGGAGGTCCAGCTTCTTCATGCTCATCAGGGATTGCTGGGATGGTGAGATGA 870 0.4264 MEGGVDSKLLEICGREVSLTELGSGKYGCTHYRRRCKIRAPCCDEIFDCRHCHNEAKNLLETDPHDRHDIPRHEVKKVICSLCDTEQDVQQNCIACGVCMGEYFCEKCKFFDDDVSKNQYHCEECGICRTGGKENFFHCNKCGCCYSNMMKDTHRCVERAMHHNCPVCFEFLFDTTKDITVLQCGHTIHWECVKEMQQHFCYSCPVCSKSICDMSSLWEKIDREVASTPMPEMYRKKMVWILCNDCGAQSEVQFHIVAHKCLSCKSYNTRQIQGGPASSCSSGIAGMVR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1272 289 ProSiteProfiles Zinc finger CTCHY-type profile. 100 164 IPR017921 -
Vvi6g1272 289 Pfam Zinc-ribbon 212 270 IPR039512 -
Vvi6g1272 289 SUPERFAMILY Zinc hairpin stack 101 158 IPR037275 -
Vvi6g1272 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 237 IPR013083 -
Vvi6g1272 289 FunFam RING finger and CHY zinc finger domain-containing protein 1 236 280 - -
Vvi6g1272 289 SUPERFAMILY CHY zinc finger-like 25 100 IPR037274 GO:0008270
Vvi6g1272 289 Gene3D - 238 278 - -
Vvi6g1272 289 Pfam CHY zinc finger 29 110 IPR008913 GO:0008270
Vvi6g1272 289 ProSiteProfiles Zinc finger CHY-type profile. 22 98 IPR008913 GO:0008270
Vvi6g1272 289 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 273 - -
Vvi6g1272 289 SMART ring_2 165 207 IPR001841 -
Vvi6g1272 289 Pfam zinc-RING finger domain 164 209 IPR001841 -
Vvi6g1272 289 SUPERFAMILY RING/U-box 164 213 - -
Vvi6g1272 289 ProSiteProfiles Zinc finger RING-type profile. 165 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1272 Vvi-Chr6 18244143 18246717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1272 27 274 C2H2 Transcription Factor Family AT3G18290 39.216 4.07e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1272 K10144 - vvi:100258546 646.736