Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1270 ATGTTGGGTCTGCGTTCATGCCACTGTCTTGGCCACAACCCTCTCTCTCGCAGTCTCAACCTCCGCTTCTCTCCTCCTCTTTCGGCCTCATTCAAATCCTTCTCTCTTAATTCTTTCTTCTCGTCAAGCCCTAACCCTAAGACTAAACCTAAACCCCAATCTAAACGTAAACCCACCATGTCCTCTCTCCCCTCCGCCTTCGATGCTCTCATGTCCAAAGCCCGAGCCGCGGCCAAGAAGAAGCCCCAATCCCAGTCCGAATCCCAATCCCAATCCTCGTCTCCGAAGAAGCGCAAAACCCAAACTCAAACCCCAGACCTTGCCCCACCTAAAAAATCTACCAATTCCCAAACCCCCGATTCCAAGATCGAACCATTGGATGCGTTGCCGGCGAAGAAACCGAAGAAGGTTGACGTCGAAGAGTGTATTGGGCAATTGAGGAAAAAGGCGGCGGATTTCAATCCCAAAACGGCGGCGTATTGGGAGGACAAGCCAGTTCCATTTCTTTTTCTTGTCAGGGCTTTTGATATGATTTCCAAGGAGACGGGTCGGATTGTGATTACGGATATTGTGTGCAATATGTTGAGGACGGTGATGCACGCCACCCCGGACGATTTAGTAGCGGTTGTCTATCTTTCAGCCAACAGGATTGCGCCGGCGCATGAGGGCTTGGAGCTTGGGATTGGGGATGCGTCAATTATTAAGGCACTTGCGGAAGCCTGTGGAAGAAAAGAAGAGCAGATTAAGAGCCAGTACAAGGCATTGGGAGATTTGGGGCTTGTTGCAAAAGCATGCCGATCATCCCAGTCTCTGATGCGCAAGCCTGATCCATTAACCGTTGCCAAGGTTTTTAATACATTTGGACTTATTGCCAAGGAATCTGGAAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGACACTTCTTGTTGCAGCCACCGACTGCGAGCCACAGTATTTAATTCGTCTACTTCAGACGAAGTTGCGAATTGGTTTGGCAGAGCAAACTCTGTTAACTGCATTGGGACAAGCTGCTGTATATAATGACAAAGAGTTGACACAACCACCTCCACATATCCAGTCGCCTCTAGAGGAGGCTGCAAATATTGTTAAGCAATCGTACTCTGTACTTCCTGTTTATGATAAAATAGTCCCTGCTCTTCTTAGCGGTGGTGTATGGAATCTTCCAAAGACATGTAGCTTTATGCCAGGTGTCCCTGTTGGACCTATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGATTAAAGAAGTCATCTGTGAGTTCATTTGTTTTGGATTGCGAACTAGTTGCCTATGACCGTCAAAAGGGGAAAATTTTGCCATTCCAGGTCCTCAGCACCCGTGCTCGTAAAAATGTGGTTATGAGTGAAATCAAGGTTGATGTTTGCATATTTGCTTTTGACATTTTGTATCGTAATGGCCAACCACTTCTTCAAGAGCAGCTCAAAATTCGTCGTGAGCATCTTTATGAGTCATTTGAGGAAGAACCTGGATTTTTCCAGTTTGCAACAGCAATAACATCAAATGATCTTGAGGAAATACAAAAATTCCTTGAAGCTGCTGTTGATACCAGTTGTGAAGGCTTGATCATTAAAACATTGAATGGAGATGCTACATATGAGCCTTCAAAGCGGTCACATAACTGGCTAAAATTGAAGAAAGATTACATGGAGAATATTGGTGACTCGCTTGATCTAGTACCTATAGCTGCTTTCCACGGTCGCGGGAAACGTGCAGGTGTCTATGGTGCCTTCCTCCTTGCTTGTTATGACAGCAATAAAGAAGAATATCAAAGCATTTGTAAAATAGGCACTGGATTTTCTGAGGCAGTGCTTGAAGAACGCTCAGCCAGTCTTCGTTCTAAAGTGATTTCCAGACCAAAGCCTTACTATCGGTATGCTGATTCAATTGATCCAGATGTATGGTTTGAACCCACTGAGGTTTGGGAGGTGAAAGCTGCAGACTTGACCATTAGCCCTGTTCATCGTGCTGCAGTTGGAATAGTGGATCCTAACAAGGGTATTTCTCTTCGGTTTCCACGTCTGGTTCGCATTCGAGATGATAAGAATCCAGAGCAAGCGTCGTCATCTGACTTGGTTGCTGAGATGTATAATGGCCAAAAGCTCAATCACCAGTCCAATCAAGATGAAAATGAAGAAGACTGA 2349 0.45 MLGLRSCHCLGHNPLSRSLNLRFSPPLSASFKSFSLNSFFSSSPNPKTKPKPQSKRKPTMSSLPSAFDALMSKARAAAKKKPQSQSESQSQSSSPKKRKTQTQTPDLAPPKKSTNSQTPDSKIEPLDALPAKKPKKVDVEECIGQLRKKAADFNPKTAAYWEDKPVPFLFLVRAFDMISKETGRIVITDIVCNMLRTVMHATPDDLVAVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRKEEQIKSQYKALGDLGLVAKACRSSQSLMRKPDPLTVAKVFNTFGLIAKESGKDSQEKKKNHIKTLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTALGQAAVYNDKELTQPPPHIQSPLEEAANIVKQSYSVLPVYDKIVPALLSGGVWNLPKTCSFMPGVPVGPMLAKPTKGVSEIIDKFQDMEFTCEYKYDGERAQIHYKEDGSVEIYSRNAERNTGKYPDVVVAVSRLKKSSVSSFVLDCELVAYDRQKGKILPFQVLSTRARKNVVMSEIKVDVCIFAFDILYRNGQPLLQEQLKIRREHLYESFEEEPGFFQFATAITSNDLEEIQKFLEAAVDTSCEGLIIKTLNGDATYEPSKRSHNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRAGVYGAFLLACYDSNKEEYQSICKIGTGFSEAVLEERSASLRSKVISRPKPYYRYADSIDPDVWFEPTEVWEVKAADLTISPVHRAAVGIVDPNKGISLRFPRLVRIRDDKNPEQASSSDLVAEMYNGQKLNHQSNQDENEED* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1270 782 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 67 781 - -
Vvi6g1270 782 FunFam DNA ligase 619 778 - -
Vvi6g1270 782 ProSiteProfiles ATP-dependent DNA ligase family profile. 516 652 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi6g1270 782 Gene3D - 145 412 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi6g1270 782 MobiDBLite consensus disorder prediction 39 61 - -
Vvi6g1270 782 NCBIfam ATP-dependent DNA ligase 225 765 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vvi6g1270 782 CDD Adenylation_DNA_ligase_I_Euk 399 617 - -
Vvi6g1270 782 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 156 400 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi6g1270 782 SUPERFAMILY Nucleic acid-binding proteins 622 768 IPR012340 -
Vvi6g1270 782 FunFam DNA ligase 145 412 - -
Vvi6g1270 782 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 404 620 - -
Vvi6g1270 782 ProSitePatterns ATP-dependent DNA ligase signature 2. 588 614 IPR016059 GO:0003909
Vvi6g1270 782 Pfam DNA ligase N terminus 167 342 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi6g1270 782 FunFam DNA ligase 410 616 - -
Vvi6g1270 782 Pfam ATP dependent DNA ligase C terminal region 639 750 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vvi6g1270 782 CDD OBF_DNA_ligase_I 622 766 - -
Vvi6g1270 782 Gene3D DNA ligase/mRNA capping enzyme 439 564 - -
Vvi6g1270 782 Pfam ATP dependent DNA ligase domain 410 614 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi6g1270 782 Gene3D - 619 781 IPR012340 -
Vvi6g1270 782 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 434 442 IPR016059 GO:0003909
Vvi6g1270 782 MobiDBLite consensus disorder prediction 750 782 - -
Vvi6g1270 782 MobiDBLite consensus disorder prediction 755 773 - -
Vvi6g1270 782 MobiDBLite consensus disorder prediction 79 122 - -
Vvi6g1270 782 Gene3D - 420 618 - -
Vvi6g1270 782 MobiDBLite consensus disorder prediction 39 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1270 Vvi-Chr6 18191777 18230810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1270 17 782 Core DNA Replication Machinery Family AT1G08130 65.740 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1270 K10747 - vvi:100256907 1465.67