Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1248 ATGGGGAGGGCTCCTTGTTGTGACAAGGCAAATGTGAAGAAGGGGCCATGGTCACCTGAAGAAGACTCAAAGCTTAAGGCGTATATAGAGAAGTATGGGACTGGAGGGAATTGGATTGCTCTCCCACAGAAAGCTGGATTGAAGAGGTGCGGGAAAAGTTGCAGATTGAGGTGGCTTAACTATCTTAGGCCCAACATTAAACATGGAGAATTCTCTGATGACGAAGACAGGATAATCTGCACTCTCTTTGCTAACATGGGAAGCAGGTGGTCAGTCATAGCTACTCGGTTACCAGGCAGGACTGACAATGATATTAAGAACTACTGGAACACCAAGCTCAAGAAGAAGGTAATGGGGATGTTCTCGTCCTCTCAGAGGAAACTACCACCATTCCCATCTGTTCAAAACCCACCCTCCCCATCAATCTCGTCTTCCTATTACATCCCACCAAGTACTTTCCCAGGCCATGAATTGCCCATTCCATTCCCATCAACTCATTTGAACAACAACACTTCTCCATTGACCAACGTCTCTCTCCTTCAAACCCAAGAGACCTTTGCGGGACCCGGCCAGTACTACCCAGTAAAAGACAACCTCTTCATGTTCGCAAGCGAAGCAAGCTGCAGTTCCTCTGATGGGAGCGGCAGTCAGATCAGCTTTGGCAGAGATATCAAACAAGAAGAAATGGGGAATTTCCAGAGTTATATCCCTACTGGTTTCGAAGAAAACCACAAGTTCATGATGGGTTATGGCGGCAGCAATGGAGGTCATGATCATAATGTGAATCACTGGCCTGAAAAGCCAAATGGGTGCTTCGGAGGGAGTCCATTAGATCAGTATAATCTTGATCAAGAGGATGTGAAGCAACAGCTCATTAGCTGCAGTAATGGGTGTACCAGCAGCTTCTTCATTGATGAAAACAAGACACAAGAGAAGGTGATGTACTACTACTGA 954 0.4623 MGRAPCCDKANVKKGPWSPEEDSKLKAYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLFANMGSRWSVIATRLPGRTDNDIKNYWNTKLKKKVMGMFSSSQRKLPPFPSVQNPPSPSISSSYYIPPSTFPGHELPIPFPSTHLNNNTSPLTNVSLLQTQETFAGPGQYYPVKDNLFMFASEASCSSSDGSGSQISFGRDIKQEEMGNFQSYIPTGFEENHKFMMGYGGSNGGHDHNVNHWPEKPNGCFGGSPLDQYNLDQEDVKQQLISCSNGCTSSFFIDENKTQEKVMYYY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1248 317 Gene3D - 69 130 - -
Vvi6g1248 317 FunFam Transcription factor RAX3 7 68 - -
Vvi6g1248 317 PANTHER OS09G0431300 PROTEIN 1 241 - -
Vvi6g1248 317 Gene3D - 7 68 - -
Vvi6g1248 317 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi6g1248 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vvi6g1248 317 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vvi6g1248 317 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vvi6g1248 317 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vvi6g1248 317 CDD SANT 16 62 IPR001005 -
Vvi6g1248 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vvi6g1248 317 SMART sant 67 115 IPR001005 -
Vvi6g1248 317 SMART sant 13 64 IPR001005 -
Vvi6g1248 317 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vvi6g1248 317 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1248 Vvi-Chr6 17935258 17936714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1248 1 119 MYB Transcription Factor Family AT5G57620 84.874 2.96e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi6g1248 Myb_DNA-binding 9.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1248 K09422 - vvi:100250017 627.476