Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1246 ATGGAGAAATCTGGGTATGGCCGTGACGGCATCTACAGGTCTCTCAGTCCTCCTCTGGTTCTGCCCAAAGACCCCAATCTCTCTTTGGTCTCATTCCTCTTCAGAAAAGCATCTTCCTACCCCAGGAGGCCCGCTCTCATCGAAGCCCATTCTGGGGAAACCGTGAATTTTGCCCAGTTCAAATCCATGGTCATCAAGGTCTCCCATGGCTTAACCCGACTGGGTCTAAAGAAAAACGATGTCGTTTTGATCTTCGCTCCCAACTCCATCCAATACCCCCTGTGTTTCTTCGGCGTTATCGCCATCGGCGCCATCGCCACCACGGCTAATCCGCTGTACACCGTCGCCGAGATCCAAAAACAAGTCAAAGATTCCAACGCCAAACTGGTTATAACCATTCCTCAACTGTGGGAAAAAGTGAAGGCACTGAATTTGCCAGCTGTCATATTAGATTCTGCAGATACCTCCAAAGACACCATCCAATCCCCCCTCAAAATCACATATTTCTCCGACCTTGTTAAGATGGCCGGCGAGGTTTCCCACTTTCCTAAAGTTTCCATAACCCAAGGCGACACAGCCGCCCTGCTGTACTCCTCCGGCACCACTGGAGCAAGCAAGGGAGTGATTTTGACACATGGGAATTTCGTGGCGGCGGCGTTGATGGTGACAATGGATGAGGAATTGATGGGCGAAATGCACAATGTGTTTTTGTGTTTTTTGCCCATGTTTCATGTGTTTGGGCTTGCTGTGGTTATGTGTGCGCAGCTGCAGATGGGCTACACGATTGTGTCCATGCCTAAGTTTGATCTTGATGTGGCTTTGAAGTCAATTGAGAAGTATAGAGTGACTCATATGTGGCTTGTGCCACCAGTCATGCTTGCTCTGGTTAAGCAGGGGAAGCTGGACAGGTACGATATCTCTTCATTGAAGCATATCGGTTCGGGTGCTGCACCTTTGGGGAAGGAGTTGATGGAGGAGTGCGCCAAGAGTCTTCCTCATGTTGCAGTCGGGCAGGGCTATGGTATGACAGAAACTTGTGGCATTGTTTCAAAGGAGATACCAAAAATAGGGATCCAGCATACTGGTTCGACTGGACCCCTTGTTTCAGGTGTGGAAGCCCAAATTATCAGTGTAGATACACTAAAGCCTCTTCCTCCTAACCAATTAGGAGAAATATGGGTTCGTGGACCTAATATGATGAAAGGTTATTTCAACAACCCACAGGCCACAAAGCTGACTATAGACAAAAAGGGTTGGGTGCATACTGGAGATGTTGGATATTTTGATGAGCAAGGGAAACTGTTTGTTGTTGATCGAATTAAAGAGCTAATCAAGTATAAAGGTTTTCAGGTCGCACCAGCAGAGCTTGAAGCGCTTCTTGTTTCACACCCTGAAATACTAGATGCTGTTGTTATCCCATTTCCCGATGCTGAAGCTGGAGAGGTACCAATTGCATATGTTGTCCGCTCTCCCAATAGTTCACTGACTGAAGAAGATGTAAAGACATTTATTGCAAATCAGGTTGCACCCTTCAAGAAATTGAGGAGGGTATCATTCATAAACACTGTTCCAAAGTCTGCTTCAGGGAAGATCCTCAGAAGAGAGCTTATTGAGAAAGTACGAGCCAAACTATAG 1635 0.4697 MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFAQFKSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEIQKQVKDSNAKLVITIPQLWEKVKALNLPAVILDSADTSKDTIQSPLKITYFSDLVKMAGEVSHFPKVSITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLCFLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQGKLDRYDISSLKHIGSGAAPLGKELMEECAKSLPHVAVGQGYGMTETCGIVSKEIPKIGIQHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMMKGYFNNPQATKLTIDKKGWVHTGDVGYFDEQGKLFVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVKTFIANQVAPFKKLRRVSFINTVPKSASGKILRRELIEKVRAKL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1246 544 Gene3D - 10 441 IPR042099 -
Vvi6g1246 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 539 - -
Vvi6g1246 544 Coils Coil 533 544 - -
Vvi6g1246 544 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Vvi6g1246 544 CDD 4CL 21 536 - -
Vvi6g1246 544 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Vvi6g1246 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 441 - -
Vvi6g1246 544 Pfam AMP-binding enzyme 34 446 IPR000873 -
Vvi6g1246 544 Gene3D - 442 543 IPR045851 -
Vvi6g1246 544 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Vvi6g1246 544 SUPERFAMILY Acetyl-CoA synthetase-like 21 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1246 Vvi-Chr6 17905053 17911917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1246 1 544 Monolignol Biosynthesis Gene Families AT4G05160 68.199 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1246 K01904 - vvi:100267198 1061.21