Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1242 ATGGTGTCTGACGCGAGCAAGAAGAAGGCGGCGGCGAAGAAGGCCGCGGCGGCCGCCAAGAGGGGAGGCAAGTCTGCTGCTGCCGCATCTTCGAAGGCGGCGGCGTCTGCGGCGGCCGCCGATGTACAGAACGGCGTTGACAAGATGGCCGATATGAAAATATCAGATCGGACTTGTACTGGTGTGCTCTGTTCGCATCCTCTTTCGCGCGATATTCGGATAGAGTCTTTATCGGTTACTTTCCATGGTCATGATCTTATAGTGGATACTGAGCTAGAGCTTAACTATGGCAGACGATATGGTTTACTTGGACTGAATGGGTGTGGAAAATCTACCCTCCTCACTGCAATTGGGTGCCGAGAACTTCCCATTCCAGAACACATGGACATCCATCATCTAACCAGAGAGATTGAAGCTTCTGACATGTCTGCCCTTGAGGCTGTCATAAGCTGTGATGAGGAGAGGTTGAAATTGGAGAAAGAAGCTGAAGTGTTGGCTGCACAGGATGATGGTGGCGGAGAGGCCCTTGATCGTGTATATGAGCGTTTGGAAGCCATGGATGCATCAACTGCAGAAAAGCGCGCTGCTGAAATCTTGTTTGGTCTTGGTTTTAATAAGACGATGCAAGCAAAGAAAACACAAGATTTCTCTGGTGGTTGGAGAATGAGGATAGCATTAGCTCGGGCTTTGTTTATGAATCCAACCATTCTGTTACTCGATGAACCCACTAATCATCTTGATTTAGAAGCTTGTGTCTGGTTGGAGGAGACATTGAAGAACTTTGATCGCATCTTAGTTGTGGTTTCACACTCCCAGGACTTTCTGAATGGTGTCTGCACAAATATCATCCACATGCAAAACAGGAAACTGAAGCTTTACACTGGTAATTATGACCAATATGTTCAAACCCGTGCTGAACTGGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGACCAGATTGCTTCAATGAAGGAGTATATTGCCCGATTTGGGCATGGGTCTGCGAAACTAGCTCGCCAGGCTCAGAGCAAGGAAAAAACTCTGGCCAAAATGGAACGTGGAGGCCTTACAGAAAAAGTGGTTAGAGACAAGATTCTTGTCTTTCGCTTCACTGATGTGGGAAAGCTTCCCCCGCCAGTACTGCAGTTTGTAGAAGTCACATTTGGCTATACTCCTGATAATCTCATTTACAAGAACATTGACTTTGGGGTAGACCTGGACTCAAGGATTGCTCTGGTGGGACCCAATGGGGCTGGGAAGAGTACTTTGCTGAAGCTCATGACTGGGGATCTGTTTCCTATTGATGGCATGGTCCGGCGGCACAACCACTTGAGAATTGCTCAGTTCCATCAGCACCTGACTGAGAAACTTGACTTGGAGATGTCTGCTCTCCTGTACATGATGAGAGAATACCCAGGAAATGAAGAAGAGAAGATGAGGGCAGCAATCGGGAAGTTTGGGCTGACAGGTAAGGCGCAGGTGATGCCAATGAAGAATCTGTCAGATGGTCAAAGGAGCCGGGTGATTTTTGCATGGTTAGCTTATAGGCAACCTCACATGTTGCTGCTGGACGAACCAACTAATCATTTGGATATTGAGACAATTGACTCACTAGCTGAAGCATTGAATGAGTGGGATGGTGGTCTGGTTCTTGTTAGTCATGATTTCAGGCTCATAAACCAGGTGGCTCAGGAGATATGGGTGTGTGAGAATCAGAAGGTGACCCGCTGGGAGGGTGACATTATGGACTTTAAGGAGCATCTGAAGAGCAAGGCTGGATTGTCTGGTTGA 1797 0.4769 MVSDASKKKAAAKKAAAAAKRGGKSAAAASSKAAASAAAADVQNGVDKMADMKISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDTELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIHHLTREIEASDMSALEAVISCDEERLKLEKEAEVLAAQDDGGGEALDRVYERLEAMDASTAEKRAAEILFGLGFNKTMQAKKTQDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEETLKNFDRILVVVSHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTRAELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFTDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPIDGMVRRHNHLRIAQFHQHLTEKLDLEMSALLYMMREYPGNEEEKMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCENQKVTRWEGDIMDFKEHLKSKAGLSG* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1242 598 CDD ABCF_EF-3 72 289 - -
Vvi6g1242 598 Coils Coil 290 310 - -
Vvi6g1242 598 SMART AAA_5 96 298 IPR003593 GO:0016887
Vvi6g1242 598 SMART AAA_5 408 575 IPR003593 GO:0016887
Vvi6g1242 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 598 IPR003439 GO:0005524
Vvi6g1242 598 Pfam ABC transporter 90 244 IPR003439 GO:0005524
Vvi6g1242 598 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 21 593 - -
Vvi6g1242 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 316 IPR027417 -
Vvi6g1242 598 CDD ABCF_EF-3 383 575 - -
Vvi6g1242 598 Pfam ABC transporter 283 355 IPR032781 -
Vvi6g1242 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 578 IPR027417 -
Vvi6g1242 598 Pfam ABC transporter 399 530 IPR003439 GO:0005524
Vvi6g1242 598 FunFam Abc transporter f family member 1 72 336 - -
Vvi6g1242 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 312 IPR003439 GO:0005524
Vvi6g1242 598 FunFam ATP-binding cassette sub-family F member 3 343 597 - -
Vvi6g1242 598 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524|GO:0016887
Vvi6g1242 598 Gene3D - 348 595 IPR027417 -
Vvi6g1242 598 Gene3D - 72 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1242 Vvi-Chr6 17838165 17844844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1242 383 576 Calmodulin-binding Proteins AT2G36910 26.222 3.65e-09 58.2