Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1241 ATGACTAAGCTTAAAAGAACGAGTGGTAAGAGGAAGAATGGCATTGTAAAGCTTAAGATCGTGGTAGAGAAGCTGCAAAAGAGCCTTTTGTTGGGGAGGAAATCAGCTTGTGAAAATGACGAGTTCAAAGATGTCAGTGACTCAACCTATGTGCCAGCTGACGTCAAGGAAGGACACTTTGCGGTGATTGCTGTGGACGACGATGAACCAAAGAGATTCGTCGTCCCATTAAATTTTCTTACTCATCCGACCTTTTTGAAGCTCTTGGAGCAAGCAGCTGAGGAGTATGGTTTTGATCATGAGGGTGCGTTGACAATCCCTTGCAGGCCGAGCGAGCTGGAGAGCATACTGGCTGAGCAATGGCAGAAGGAAAGGGATTCCAGTGTTGGTGTTCCCTGGGGTTCCTGGAAAACCATGGTTAAGAGCTGTTAG 432 0.4699 MTKLKRTSGKRKNGIVKLKIVVEKLQKSLLLGRKSACENDEFKDVSDSTYVPADVKEGHFAVIAVDDDEPKRFVVPLNFLTHPTFLKLLEQAAEEYGFDHEGALTIPCRPSELESILAEQWQKERDSSVGVPWGSWKTMVKSC* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1241 143 Pfam Auxin responsive protein 40 117 IPR003676 GO:0009733
Vvi6g1241 143 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 34 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1241 Vvi-Chr6 17828336 17828767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1241 14 108 Calmodulin-binding Proteins AT3G43120 44.211 1.45e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1241 - K14488 vvi:100244862 292.352