Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1240 ATGGCTAAGTTTAGAAGTAACAGTGCTAAGAAAAAGAACGGCATTGTAAGGCTTAAGATTGTTGTAGAGAAGCTGCAAAAGAGCCTTTCATTGGGGAAGAAATCAGCTTCTGACTATGACGATCTTGAAGAGGTTATTGACTCAGCATATGTGCCACCTGATGTCAAGGAAGGACACTTTGCAGTGATTGCAGTGGATGGCCAGGAACCTAAGAGATTTGTGGTTCCACTCAATTTTCTTACTCACCCACCATTCTTGAGGCTTTTGGAGCAAGCAGCTGAGGAATATGGTTTTGACCATGAGGGTGCATTAACAATCCCTTGTCGGCCCAGCGAGCTTGAGAGGTTACTGGCTGAGCAATGGAAGCCGGAGAGAGATCATAGCGTTGGTGTCAACTGGGATTCCTGTAAAACCTTGGTTAAGAGCTGTTAG 432 0.4514 MAKFRSNSAKKKNGIVRLKIVVEKLQKSLSLGKKSASDYDDLEEVIDSAYVPPDVKEGHFAVIAVDGQEPKRFVVPLNFLTHPPFLRLLEQAAEEYGFDHEGALTIPCRPSELERLLAEQWKPERDHSVGVNWDSCKTLVKSC* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1240 143 Pfam Auxin responsive protein 49 117 IPR003676 GO:0009733
Vvi6g1240 143 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 30 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1240 Vvi-Chr6 17809104 17809535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1240 7 117 Calmodulin-binding Proteins AT3G43120 39.286 3.53e-20 79.7