Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1235 ATGCACTCCATAACCATAGAGACATTGAAGATTTTCCGCGGGGATACTATTCTCATCAAGGGCAAGAAGAGGAAGGACACAGTCTGCATTGCCATTACTGATGACACATGTGAGCCAGCAAAGATCAGGATGAACAAGATTGTTAGGTCAAATCTGAGGGTTAAGCTTGGAGACGTCGTATCTGTGCACGATTGCATGGATATTATGTATGGGGAGCGTGTCCACATACTGCCAATGGATGACACCATAGAAGGTGTCACTGGAAATCTATATGATGCATACCTGAAACCTTATTTCTCGGATAATTTCCGCCCTGTGAGGAAAGGGGATCTCTTCCTTGTGAGGGGAGGGATGAGAAGTGTAGAGTTCAAGGTTGTTGAAACCCACCCAGGGGAGTACTGTGTGGTTGATCCAGACACTGAAATCTTCTTTGAAGGGAAGCCGGTGAGGAGGGAGGATGAAGAAAGGTTGGATGAGGTTGGTTATGATGATGTTGGTGGCTTTCGGAAACAAATGGCTCAAATACGTGAGTTAGTCGAGCTGCCATTGAGGCATCCTCAACTTTTTAAATCAATTGGTGTAAAGCCACCCAAAGGAATTCTACTTTATGGACCCCCAGGTTCTGGAAAAACTTTAATAGCCAAGGCTGTTGCTAATGAAACTGGTGCCTTCTTCTTCTGTATTAATGGACCTGAGATTATGTCAAAATTGGCTGGAGAGAGTGAAGGAAATCTCAGGAAGGCATTCGAGGAAGCTGAGAAGAATGCCCCATCCATAGTCTTTATTGATGAGATTGATTCAATTGCACCTAAACGGGAGAAAACACATGGCCAAGTTGAAAAGCGTATTGTTTCACAGCTTTTGACTCTCATGGATGGACTGAAATCCCGGGCTCATGTTATTGTTATTGGAGCTACTAATCGCCCAAACAGCATTGACCCAGCTTTGAGAAGGTTTGGTCGGTTTGACAGAGAAATAGACATTGGTGTTCCAGATGAAGTTGGCCGTCTTGAAGTTCTTCGCATTCATACCAAGAACATGAAGCTCTCTGATGATGCAATTCAAAAAGAAAAAGGAATTATAGTTGATTTGGAAAGGATTGCAAAAGATAGTCACGGCTATGTTGGTGCTGATCTTGCTGCTCTCTGCACTGAAGCTGCACTTCAGTCTATTAGAGAAAAGATGGATGTGATAGACTTGGAAGATGAAGCTATTGATGCTGAAGTACTCAATTCCATGGCTGTTACTGATAAGCACTTCAAGACTGCACTGGGAACAACCAACCCATCTGCTTTGCGGGAAACGGTTGTTGAAGTGCCAAATGTCAGCTGGGAAGACATTGGTGGTCTTGAGTATGTCAAGCGGGAGCTTCAGGAGACTGTTCAATATCCTGTGGAGCATCCAGAGAAGTTTGAGCAATTTGGTATGTCGCCTTCCAGAGGGGTACTTTTCTATGGCCCACCAGGATGTGGGAAAACTCTACTGGCTAAGGCAATTGCAAATGAGTGTCAAGCAAACTTTATCAGTGTCAAGGGGCCTGAACTGCTCACAAAGTGGTTTGGTGAGAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTCGACAGTCAGCATCATGTGTCCTTTTCTTCGACGAGCTTGACTCCATTGCTACTCAGAGGGGGAGCAATCTTGGGGATGCAGGTGGTGCTGATCGGGTCCTGAACCAACTCTTGATTGAGATGGATGGCATGTCAGCAAAAAAGACTGTTTTCATAATTGGGGCTACAAACAGACCTGACATAATTGACCCAGCACTTTTGCGGCCAGGACGTCTTGATCAGTTGATTTATATCCCCCTGCCAGATGAAGACTCTCGGCATCAGATTTTTAAGGCCTGCTTAAGAAAATCACCAGTTTCTAAGCATGTGGATTTGAGGGCCCTCGCCAAGTACACTCAAGGCTTTAGTGGAGCAGATATTACAGAAATATGCCAGCGAGCATGCAAGTATGCAATAAGAGAGAACATTGAGAAGGACATAGAGAAGAAGAGGGGGAGAGAGGAAAATCCTAAGGCTATGGATGAGGACCTTGAGGAAGAGGTTGCAGAGATTACGGCCTCTCACTTTGAGGAGTCAATGAAGTATGCTCGCAGGAGTGTGAGTGAGGCTGACATACGCAAATACCAGGCATTTGCTCAGCAGTCTAGGGGTTTTGGATCACAATTCCGGTTTTCAGAGGCAGGACCAGGTGGCTCTGGTTCTAACCCATTAGGAACTTCTACTAGTGGGCCGGAAGAAGATGATCTTTATAGTTAG 2298 0.4513 MHSITIETLKIFRGDTILIKGKKRKDTVCIAITDDTCEPAKIRMNKIVRSNLRVKLGDVVSVHDCMDIMYGERVHILPMDDTIEGVTGNLYDAYLKPYFSDNFRPVRKGDLFLVRGGMRSVEFKVVETHPGEYCVVDPDTEIFFEGKPVRREDEERLDEVGYDDVGGFRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKNAPSIVFIDEIDSIAPKREKTHGQVEKRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDAIQKEKGIIVDLERIAKDSHGYVGADLAALCTEAALQSIREKMDVIDLEDEAIDAEVLNSMAVTDKHFKTALGTTNPSALRETVVEVPNVSWEDIGGLEYVKRELQETVQYPVEHPEKFEQFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKARQSASCVLFFDELDSIATQRGSNLGDAGGADRVLNQLLIEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKHVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKKRGREENPKAMDEDLEEEVAEITASHFEESMKYARRSVSEADIRKYQAFAQQSRGFGSQFRFSEAGPGGSGSNPLGTSTSGPEEDDLYS* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1235 765 Gene3D - 165 329 IPR027417 -
Vvi6g1235 765 Gene3D - 68 164 - -
Vvi6g1235 765 Pfam Cell division protein 48 (CDC48), domain 2 87 150 IPR004201 -
Vvi6g1235 765 Pfam AAA+ lid domain 362 402 IPR041569 -
Vvi6g1235 765 Pfam AAA+ lid domain 637 677 IPR041569 -
Vvi6g1235 765 FunFam Cell division control 48 331 431 - -
Vvi6g1235 765 SMART AAA_5 196 332 IPR003593 GO:0016887
Vvi6g1235 765 SMART AAA_5 478 616 IPR003593 GO:0016887
Vvi6g1235 765 MobiDBLite consensus disorder prediction 746 765 - -
Vvi6g1235 765 FunFam Transitional endoplasmic reticulum ATPase 161 329 - -
Vvi6g1235 765 Pfam Cell division protein 48 (CDC48), N-terminal domain 5 65 IPR003338 -
Vvi6g1235 765 SUPERFAMILY ADC-like 3 65 IPR009010 -
Vvi6g1235 765 MobiDBLite consensus disorder prediction 733 765 - -
Vvi6g1235 765 ProSitePatterns AAA-protein family signature. 584 602 IPR003960 GO:0005524|GO:0016887
Vvi6g1235 765 Gene3D - 432 614 IPR027417 -
Vvi6g1235 765 Gene3D - 618 726 - -
Vvi6g1235 765 FunFam Cell division control 48 68 164 - -
Vvi6g1235 765 SMART CDC48_2_2 85 151 IPR004201 -
Vvi6g1235 765 NCBIfam CDC48 family AAA ATPase 5 729 IPR005938 GO:0016787
Vvi6g1235 765 CDD RecA-like_CDC48_r1-like 164 329 - -
Vvi6g1235 765 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
Vvi6g1235 765 Pfam Vps4 C terminal oligomerisation domain 697 728 IPR015415 -
Vvi6g1235 765 PANTHER AAA-FAMILY ATPASE 361 729 - -
Vvi6g1235 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 431 IPR027417 -
Vvi6g1235 765 FunFam Transitional endoplasmic reticulum ATPase 432 614 - -
Vvi6g1235 765 Gene3D - 1 67 - -
Vvi6g1235 765 Pfam ATPase family associated with various cellular activities (AAA) 482 614 IPR003959 GO:0005524|GO:0016887
Vvi6g1235 765 Pfam ATPase family associated with various cellular activities (AAA) 200 329 IPR003959 GO:0005524|GO:0016887
Vvi6g1235 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 726 IPR027417 -
Vvi6g1235 765 SUPERFAMILY Cdc48 domain 2-like 68 159 IPR029067 -
Vvi6g1235 765 Gene3D - 331 431 - -
Vvi6g1235 765 CDD RecA-like_CDC48_r2-like 453 612 - -
Vvi6g1235 765 SMART CDC48_N_2 2 68 IPR003338 -
Vvi6g1235 765 FunFam Transitional endoplasmic reticulum ATPase 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1235 Vvi-Chr6 17725616 17729582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1235 411 673 Calmodulin-binding Proteins AT3G56690 47.529 1.06e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1235 K13525 - vvi:100246467 1490.32