Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1232 ATGAGTAACATTGAAGGGTCCCCAGGAAGCTCCATGCATGGAGTCACAGGCCGAGAACAAACCTTTGCCTTTTCAGTGGCTTCCCCAATCGTCCCAACTGACACCTCTGCTAACTTTGCTTTACCGGTCGATTCTGAGCATAAGGCCAAGGTTTTCAAGATCCTTTCCTTTGCCAATCCTCATATGAGAACCTTTCACCTCTCTTGGATCTCCTTCTTCACTTGTTTTGTTTCCACTTTTGCCGCTGCTCCTCTTGTCCCCATCATACGCGACAACCTCAACCTTACGAAAGGAGACGTTGGAAATGCTGGAGTGGCTTCTGTTTCAGGAAGCATTTTCTCCAGGCTAGTAATGGGTGCAGTTTGTGACCTGTTGGGGCCACGGTATGGGTGTGCTTTCCTTGTCATGCTATCCGCCCCAACCGTCTTCTGCATGTCCTTTGTGTCATCAGCAGGAGGCTACATAGCTGTTCGGTTCATGATCGGATTCTCCCTGGCCACCTTTGTGTCTTGCCAGTACTGGATGAGCACCATGTTTAATGGTAAGATCATTGGTCTTGTCAATGGAACGGCCGCTGGGTGGGGAAACATGGGTGGTGGAGCAACTCAGCTCATAATGCCAATTCTGTATGAGGTAATCTGCAGAGTTGGTTCCACTCCATTTACTGCCTGGAGGATTGCATTCTTCATTCCAGGGTGGCTTCATGTGATCATGGGGATCTTAGTCTTAACTCTTGGCCAAGACCTACCTGATGGGAACCTCAGCACCCTGCAGAAAAAGGGAGATGTGTCCAGAGATAAGTTCTCTAGGGTTTTCTGGTATGCCATCACGAACTATAGAACATGGATCTTTGTCCTGCTCTATGGCTACTCCATGGGTGTAGAGTTGTCCATTGATAACGTAATTGCAGAATATTTCTATGATAGGTTCAATCTCAAGCTACACACTGCCGGAATCATTGCCGCCACCTTTGGCATGGCCAACCTCGTGGCCCGCCCCTTTGGTGGATACAGTTCAGACTTAGCAGGCCGAAGATTCGGCATGAGGGGCAGGCTATGGACCCTTTGGATCCTCCAAACTCTTGGAGGGGTATTCTGTATCTGGCTCGGCCGTGCCAATTCACTTTCCATTGCAGTCTTGGCCATGATGCTCTTCTCCGTTGGAGCTCAGGCCGCATGTGGAGCAACTTTTGGCATTGTTCCTTTCATTTCTCGACGATCTTTGGGCATAATATCTGGCCTAACCGGTGCAGGTGGGAACTTTGGCTCCGGACTGACCCAGTTGGTGTTCTTCAGCTCCTCAAAATTCTCCACAGCAACAGGCCTCTCCTTAATGGGGGCCATGATTGTCGCTTGCACTCTTCCCGTGACATTGGTGCACTTCCCACAGTGGGGAAGCATGTTCCTCCCACCTTCAAAGGACGTGGTAAAAGGTACTGAAGAACACTATTACGAGTCCGAGTGGAATGAGGAGGAGAAGCAGAAGGGTATGCACCAGGGAAGTCTCAAGTTCGCGGAGAACAGCCGGTCAGAGCGTGGCCAACGCGTTGCCTCAGCACCAACCCCTCCCAACTCTACACCATCCCATGTTTAG 1593 0.5035 MSNIEGSPGSSMHGVTGREQTFAFSVASPIVPTDTSANFALPVDSEHKAKVFKILSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKGDVGNAGVASVSGSIFSRLVMGAVCDLLGPRYGCAFLVMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGATQLIMPILYEVICRVGSTPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLSTLQKKGDVSRDKFSRVFWYAITNYRTWIFVLLYGYSMGVELSIDNVIAEYFYDRFNLKLHTAGIIAATFGMANLVARPFGGYSSDLAGRRFGMRGRLWTLWILQTLGGVFCIWLGRANSLSIAVLAMMLFSVGAQAACGATFGIVPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSSSKFSTATGLSLMGAMIVACTLPVTLVHFPQWGSMFLPPSKDVVKGTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGQRVASAPTPPNSTPSHV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1232 530 MobiDBLite consensus disorder prediction 487 530 - -
Vvi6g1232 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vvi6g1232 530 FunFam Nitrate transporter 2.1 265 466 - -
Vvi6g1232 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 515 IPR044772 GO:0015112
Vvi6g1232 530 Gene3D MFS general substrate transporter like domains 268 466 IPR036259 -
Vvi6g1232 530 MobiDBLite consensus disorder prediction 501 530 - -
Vvi6g1232 530 FunFam High affinity nitrate transporter 57 254 - -
Vvi6g1232 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Vvi6g1232 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Vvi6g1232 530 ProSitePatterns Sugar transport proteins signature 1. 335 350 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vvi6g1232 530 Gene3D MFS general substrate transporter like domains 57 254 IPR036259 -
Vvi6g1232 530 SUPERFAMILY MFS general substrate transporter 59 459 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1232 Vvi-Chr6 17713519 17715378 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1232 1 530 Inorganic Solute Cotransporters AT5G60770 81.321 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1232 K02575 - vvi:100241340 1048.5