Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1225 ATGGAGATAGAGGTGGCAAATGGTGGTGGAGGGGGTAGGGGTGGTGACGGCCATGACGGGAGAGCAAAGTATCTGGTGTGGGAAGATCTGACGGTGGTGCTGCCAAATTTTGGGAATGGACCCACAAAGAGGTTGCTTCATGGGCTCAGTGGGTGTGCTGAGGCCGGTAGGATCATGGCCATTATGGGTCCTTCTGGCTCTGGCAAATCCACGCTTCTCGATTCCTTGGCAGGTAGGCTTGCAGGAAATGTTATTATGACTGGAAATGTGCTACTTAATGGGAAAAAGAGGAGACTAGACTATGGTGGTGTTGCTTATGTGACTCAAGAGGATGTTTTGTTGGGAACTCTAACAGTGAAAGAAACATTGTCATACTCAGCTCACCTGAGGCTTCCATCTTCCATGACCAGAGAGGAGGTTGATGAGATTGTAGAGGGAACAATCATGGAAATGGGACTCCAAGATTGCTCTGATCGGTTGGTCGGAAACTGGCATCTCAGAGGCATAAGTGGGGGTGAAAAGAAGAGAGTCAGCATTGCACTAGAAATCCTATCGAGGCCTCGTCTCTTGTTTCTTGATGAACCTACTAGCGGCCTTGACAGTGCCTCAGCTTTTTTCGTGACTCACACTCTGCGAAACATAGCTCGTGATGGCAGAATAGTCATCTCTTCTATCCACCAGCCAAGTAGTGAAGTATTTGCACTCTTTGATGACCTTTTCATGCTTTCTGGTGGCGAGACGATTTACTCTGGAGAAGCAAAGAAGGCTGTAGAGTTCTTTGATGAAGCTGGTTTTCCATGCCCAAGTAGAAGAAATCCTTCTGATCACTTCCTTCGCTGTATTAATTCAGACTTTGATGTTGTTACTGCCACCTTGAAGGGATCTCAAAGAAAATATGAAATCCAATCAACAGATCCTTTGATGAACTTGGCAACAGCAGAGATCAAAGCAATGCTTGTTCGAAAATACAAACTCTCAGAATATGCAAACAGGGCAAGAGCTAGGATTCAGGAAATCTCAACCATTGAAGGACTCGTGAGTGAATCTGAAAGGGGGAGCCAAGCAAGATGGTGGAAGCAACTGTCCACACTGACACGACGCTCTTCTGTGAACATGTCTAGAGATATAGGTTATTACTGGTTAAGAGTAATAATATATACAGTCGTATCTGTTTGTGTTGGTACCATCTATTTCGATGTTGGCACTGGCTATACTTCAATCCTTGCACGGGGAGCTTGTGGCGGATTTGTATCAGGCTTTATGACATTCATGTCCATTGGAGGTTTCCCATCCTTCATTGAAGAAATGAAGGTGTTTTATAGAGAAAGGCTCAATGGGCACTATGGAATTTTGGTGTTTATCCTATCAAACTTCCTCTCTTCACTCCCATTCTTGATTGGAATGTCACTTACTACCACAACTATCATTTACTACACGGTGAAACTCCAGCCAGGATTTCTCCATTATACGTTTGGCTTCCTCACTCTTCTTAGCTCCATTGCTGTTGTTGAGAGCATCATGATGATTGTAGCTTCGCTGGTTCCCAACTTCTTGCTAGGAATGGTAACCGGTGCTGGAATCATCGGAATCATGATGATGACATCTGGGTTTTTCCGATTGCTGCCTGATATTCCCAAGCCAGTTTGGCGCTACCCAATTTCATATATCAATTATGGAGCATGGGCTTTGCAGGGGGCATACAAGAATGAACTGATAGGGCTCGAGTTTGATCCTCCATTTCCTGGTGAACCAAAACTGAAAGGCGAGCATATCCTCACAACTATCCTGGGTGTTCGAATGGATCATTCCAAGTGGTGGGACTTGACTGCTGTTGTAATCATTCTCATATCATACAGAGTTCTCTTCTTCACTATTCTCAAGTTGAGGGAGAGAACTTCACCATTGTTCCGAAGGCTTTACACCAAGAGAACTCTGCATCATCTTGAGAAGAGGCCATCATTCAGGAAGAAGCCATCATTTCCTTCAAAGAGGCACCAAACTCTCAGTTCGTTGTCTTCTCAAGAGGGTCTTAACTCTCCCCTTCATTAG 2049 0.4485 MEIEVANGGGGGRGGDGHDGRAKYLVWEDLTVVLPNFGNGPTKRLLHGLSGCAEAGRIMAIMGPSGSGKSTLLDSLAGRLAGNVIMTGNVLLNGKKRRLDYGGVAYVTQEDVLLGTLTVKETLSYSAHLRLPSSMTREEVDEIVEGTIMEMGLQDCSDRLVGNWHLRGISGGEKKRVSIALEILSRPRLLFLDEPTSGLDSASAFFVTHTLRNIARDGRIVISSIHQPSSEVFALFDDLFMLSGGETIYSGEAKKAVEFFDEAGFPCPSRRNPSDHFLRCINSDFDVVTATLKGSQRKYEIQSTDPLMNLATAEIKAMLVRKYKLSEYANRARARIQEISTIEGLVSESERGSQARWWKQLSTLTRRSSVNMSRDIGYYWLRVIIYTVVSVCVGTIYFDVGTGYTSILARGACGGFVSGFMTFMSIGGFPSFIEEMKVFYRERLNGHYGILVFILSNFLSSLPFLIGMSLTTTTIIYYTVKLQPGFLHYTFGFLTLLSSIAVVESIMMIVASLVPNFLLGMVTGAGIIGIMMMTSGFFRLLPDIPKPVWRYPISYINYGAWALQGAYKNELIGLEFDPPFPGEPKLKGEHILTTILGVRMDHSKWWDLTAVVIILISYRVLFFTILKLRERTSPLFRRLYTKRTLHHLEKRPSFRKKPSFPSKRHQTLSSLSSQEGLNSPLH* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1225 682 MobiDBLite consensus disorder prediction 650 682 - -
Vvi6g1225 682 CDD ABCG_EPDR 24 251 - -
Vvi6g1225 682 Pfam ABC-2 type transporter 226 282 IPR043926 GO:0140359
Vvi6g1225 682 ProSitePatterns ABC transporters family signature. 169 183 IPR017871 GO:0005524|GO:0016887
Vvi6g1225 682 Gene3D - 17 263 IPR027417 -
Vvi6g1225 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 269 IPR003439 GO:0005524
Vvi6g1225 682 Pfam ABC-2 type transporter 360 570 IPR013525 GO:0016020|GO:0140359
Vvi6g1225 682 MobiDBLite consensus disorder prediction 663 682 - -
Vvi6g1225 682 SMART AAA_5 55 226 IPR003593 GO:0016887
Vvi6g1225 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 264 IPR027417 -
Vvi6g1225 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 21 651 - -
Vvi6g1225 682 Pfam ABC transporter 46 197 IPR003439 GO:0005524
Vvi6g1225 682 FunFam ABC transporter G family member 11 19 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1225 Vvi-Chr6 17559370 17564065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1225 41 238 Calmodulin-binding Proteins AT2G36910 30.622 3.19e-12 68.2