Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1224 ATGGAGATAGAGGTGGAAGATGGTGATGGTGGTAGTGGTAGCCGAGGAGGAAATGTGGGGGTGGTGGCTCACTTGGTTTGGGAAGATTTGACAGTGGTGGTGCCAAGTTTTGGGAGTGGAGCCACCAGGAGGGTGCTGCAAGGGTTGAGTGGGTATGCTGAGCCTGGTAGGCTCATGGCTGTTATGGGTCCCTCTGGCTCCGGAAAATCCACTCTTCTTGATTCATTAGCTGGTAGACTATCAAGAAATGTGATTTTGTCTGGAAATGTTGTTCTCAATGGAAAGAAGAGGAGCCTCGATCATGATGGAGTTGCTTATGTGACCCAAGAAGACGTACTTTTGGGAACTTTGACAGTTAAAGAAACCCTGACTTATTCAGCCCAACTGAGACTTCCAACTATCATGACCAAAGAAAAGGTCAATAGCATTGTAGAGGAAACAATCAAGGAAATGGGACTAGAACATTGTGCTGATCAGCTCATCGGAAGCTGGCATTTGAGAGGCATAAGCAGTGGAGAAAAGAAGAGACTGAGTATTGCCCTAGAGATCCTAACACAACCCCATCTCTTGTTGCTGGATGAGCCTACTAGTGGCCTTGACAATGCTTCAGCCTTCTTTATAACTCAAACTCTTAAAAACGCCGCTTTCAATGGAAGAACTGTGATTTCTTCCATTCATCAGCCGAGCAGTGAAGTGTTTGCACTTTTAGATGACCTTCTTTTATTGTCCAATGGCGAAACCGTCTACTTTGGAGAGGCAAAGATGGCCTTACAGTTCTTTGCCGAGGCGGGATTTCCATGTCCAAGTAGAAGAAATCCGTCTGATCACTTTCTTCACTGCACCAATTCAAGCTTTGACACGGTCAGGAGCACGTTAATTAGGTCCCATAAAATGCATGAACCCGAACAGTCATCGGATTCTTTGATGAATTTGGGAGCAGTAGAGATCAAAGCAACACTTATTGAGAAATACAATTGCTCAAAGTATGCAACCAAAACAAGATCCAGGATTCGAGAAATCTCCAACACTGTACGGAACCTTTCAATTATATATGAGCTTAACTGA 1065 0.4451 MEIEVEDGDGGSGSRGGNVGVVAHLVWEDLTVVVPSFGSGATRRVLQGLSGYAEPGRLMAVMGPSGSGKSTLLDSLAGRLSRNVILSGNVVLNGKKRSLDHDGVAYVTQEDVLLGTLTVKETLTYSAQLRLPTIMTKEKVNSIVEETIKEMGLEHCADQLIGSWHLRGISSGEKKRLSIALEILTQPHLLLLDEPTSGLDNASAFFITQTLKNAAFNGRTVISSIHQPSSEVFALLDDLLLLSNGETVYFGEAKMALQFFAEAGFPCPSRRNPSDHFLHCTNSSFDTVRSTLIRSHKMHEPEQSSDSLMNLGAVEIKATLIEKYNCSKYATKTRSRIREISNTVRNLSIIYELN* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1224 354 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 21 343 - -
Vvi6g1224 354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 269 IPR003439 GO:0005524
Vvi6g1224 354 ProSitePatterns ABC transporters family signature. 169 183 IPR017871 GO:0005524|GO:0016887
Vvi6g1224 354 Pfam ABC-2 type transporter 226 283 IPR043926 GO:0140359
Vvi6g1224 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 260 IPR027417 -
Vvi6g1224 354 FunFam ABC transporter G family member 11 19 263 - -
Vvi6g1224 354 CDD ABCG_EPDR 25 251 - -
Vvi6g1224 354 Gene3D - 21 261 IPR027417 -
Vvi6g1224 354 SMART AAA_5 55 246 IPR003593 GO:0016887
Vvi6g1224 354 Pfam ABC transporter 46 197 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1224 Vvi-Chr6 17528718 17554303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1224 36 238 Calmodulin-binding Proteins AT2G36910 31.222 1.85e-13 70.1