Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1223 ATGTTAGATATAAATTCTGGCTTATCTTCTTTCACTTTGCAGCAGAATATCCTTTGCAGGAGCATGGAGATAGAAGTGGAAGGCGACAATGGTGGTGGTGGTGATGGTGGCGGTGTTGGTGGTAATGGAGGAGGTGATCATGATCACCGGAGGTTGGTGGCTTACTTGGTTTGGGAAGATTTAACAGTGGTGGTGCCAAGCTTTCGGGGTGGAGCCACCAGGAGGCTGCTGCATGGAGTTACTGGGTATGCCGAGCCTGGTAGGATCATGGCTGTTATGGGTCCATCTGGATCCGGAAAGTCTACTCTTCTTGATTCATTAGCAGGTAGACTATCAAGAAATGTTATCATGACAGGAAGTGTTCGTATTAATGGGCAAAGGAGGCTGCATGGTGGTATTGCTTATGTGACCCAACATGATGTACTTTTGGGAACTTTGACAGTGAAAGAAACCATGACTTACTCAGCCCATCTGAGACTCCCTACTACCATGACTAAAGAAGAGGTTAATGGCATTGTAGAGGAAACAATCCTGGAAATGGGACTTCAAAATTGTGCTAATGGGTTTATTGGCAACTGGCATATAAGAGGTATTAGCGGTGGAGAGAAGAAAAGGCTTAGTATTGCATTAGAGATTCTAACACAGCCCCGCCTCTTGTTTCTCGACGAGCCCACTAGTGGCCTTGACAGTGCCTCAGCCTACTTCATAATTCAAACTCTTAAGAATACTGCTTGCAATGGAAGAACAGTCATCTCCTCAATTCACCAGCCTAGTAGTGAAGTTTTTGCTCTGTTTGATCACCTTCTTTTATTATCTGGTGGCGAAACTGTCTACCATGGAGAAGCTAAAAGGGCTGTGGAGTTCTTTGCGGAGGCCGGATTTCCATGTCCAAGTCGAAGAAATCCATCCGATCACTTCCTTCGCTGTATTAACTCGAGCTTTGACACTATCAGGAACACTTCCATGGGATCTCACAAACCACATTCACAGGAAATAAAAAAATTATCAGATCCTTTGATGAATATGGCAACAGCAGATATCAAAGCTACACTGGTTGAGAAATACAAGTGCTCCAAGTATGCAACAAAAGCAAGATCCAGGATTAGAGAAATCTCCGTCATTGATGGACTTGAGATAGAAAAAAAAGGAGGGAGCCAAGCAGGATGGCAGAAGCAACTTTTGATACTAACACAAAGGTCTTTTGTGAACATGTCAAGAGATGCGGGATACTACTGGATTAGGATACTAGTCTATACTGTCCTATCAATATGTGTTGGTACCGTCTTCTATGATGTTGGCGCTAGTACAGGATATACTGCTATCATGAGTCGGGTAAACTGTGGCGGTTTCATAACGGGGTTTATGACAATCATGGCAGTCGGAGGCTTCCCTTCCTTCATAGAGGAAATAAAGGTTTTCAATAGAGAAAGGCTCAACCGGCATTATGGAAATGCTGTGTATATTGTATCAAACTTCCTGTCTTCGTTTCCTTTCTTGTTTGTTACCTCGTTTGCTACCATAACAATTGTCTTTTTCATGGGGAAGATTAGATCTGGATTTAATTATTATATATACCTATGCCTTGTTCTGCTTAGCTGCATGGCTACTGTAGAAAGCTGCATGATGGTTGTAGCTTCTTTGGTTCCCAACTATATGATGGGAATCGTAGTTGGTGTTGGATTCAGTGGCATTATGATGCTGGCATCGGGGTATTACCGAAGTTTAGACGATATTCCTAAGCCATTCTTGCGCTACCCGATTTCATATATCAGTTTCATGGCATGGGCAGTGCAGGGAGTGTACAAGAATCTTCTACTCGGGCTTGAGTTTGATCCTATAATACCGGGTACCCCAAAACTGAAAGGCGAGGTGGTATTGCGAACTATGCTTGGAATTCCATTAAGTCATTCAAAATGGTGGGACTTGACTGCTATTCTAGTCATTTTTATTTCTTATAGACTTCTCTTCTTGGTTATTGCAAAGCTCAAGGAACGAGCTTCACCATTGTTTTGGACACTTCATGCCAACAAAATTCTGCAACATCTCGATAAGAAGTCTTCAGTGAAGAAGAAGCCTTCTTGCCCTTCCAAAAGACACCATCCTCCTCATTCGCTGTCTTCTCAAGAGGGCCTTAGCTCTCCATTAGCCTAG 2151 0.4314 MLDINSGLSSFTLQQNILCRSMEIEVEGDNGGGGDGGGVGGNGGGDHDHRRLVAYLVWEDLTVVVPSFRGGATRRLLHGVTGYAEPGRIMAVMGPSGSGKSTLLDSLAGRLSRNVIMTGSVRINGQRRLHGGIAYVTQHDVLLGTLTVKETMTYSAHLRLPTTMTKEEVNGIVEETILEMGLQNCANGFIGNWHIRGISGGEKKRLSIALEILTQPRLLFLDEPTSGLDSASAYFIIQTLKNTACNGRTVISSIHQPSSEVFALFDHLLLLSGGETVYHGEAKRAVEFFAEAGFPCPSRRNPSDHFLRCINSSFDTIRNTSMGSHKPHSQEIKKLSDPLMNMATADIKATLVEKYKCSKYATKARSRIREISVIDGLEIEKKGGSQAGWQKQLLILTQRSFVNMSRDAGYYWIRILVYTVLSICVGTVFYDVGASTGYTAIMSRVNCGGFITGFMTIMAVGGFPSFIEEIKVFNRERLNRHYGNAVYIVSNFLSSFPFLFVTSFATITIVFFMGKIRSGFNYYIYLCLVLLSCMATVESCMMVVASLVPNYMMGIVVGVGFSGIMMLASGYYRSLDDIPKPFLRYPISYISFMAWAVQGVYKNLLLGLEFDPIIPGTPKLKGEVVLRTMLGIPLSHSKWWDLTAILVIFISYRLLFLVIAKLKERASPLFWTLHANKILQHLDKKSSVKKKPSCPSKRHHPPHSLSSQEGLSSPLA* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1223 716 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524|GO:0016887
Vvi6g1223 716 Pfam ABC transporter 77 226 IPR003439 GO:0005524
Vvi6g1223 716 CDD ABCG_EPDR 54 280 - -
Vvi6g1223 716 SMART AAA_5 86 275 IPR003593 GO:0016887
Vvi6g1223 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 56 298 IPR003439 GO:0005524
Vvi6g1223 716 Pfam ABC-2 type transporter 392 605 IPR013525 GO:0016020|GO:0140359
Vvi6g1223 716 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 49 685 - -
Vvi6g1223 716 FunFam ABC transporter G family member 11 50 292 - -
Vvi6g1223 716 Gene3D - 54 292 IPR027417 -
Vvi6g1223 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 289 IPR027417 -
Vvi6g1223 716 MobiDBLite consensus disorder prediction 684 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1223 Vvi-Chr6 17508925 17518778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1223 87 366 Calmodulin-binding Proteins AT2G36910 26.821 3.21e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1223 K05681 - vvi:100244768 1382.47