Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1222 ATGGGGAGGGGGATAGAGATGGCCAGTGGTGGCAGTGACGGTGTGGAAGTGGAGGATGGGTGGTCTAGAGGCAGAGCTCATGAGGGAGGAACTTACTTGGTGTGGGAGGATCTCACTGTGGTGCTGCCAAACTTCGGGAAGGGACCCACTAAGCGGTTGCTTCAGGGGCTAACTGGCTATGCTGAGCCTGGTAGGATCATGGCCATTATGGGTCCTTCTGGCTCTGGGAAATCCACTCTTCTTGACTCTCTAGCAGGTAGACTCTCAAGAAATGTGATAATGACTGGAAATGTTCTTCTTAATGGGAGGAAGAGGAGGCTAGACTGTGGATTTGTTGCTTATGTGACCCAAGAAGATGTACTGCTGGGAACGCTCACAGTTAGGGAAACCATAACATACTCAGCACATTTGAGGCTTCCAACTAGCATGACCAAAGAAGAGATTAATGGGATTGTAGATGGAACAATCATGGAAATGGGTCTACAAGATTGCTCTGATAGACTGATTGGGAACTGGCATTTAAGAGGTATAAGTGGTGGAGAGAAGAAGAGATTGAGCATTGCCCTTGAAATTCTTACGCGTCCCCGTCTTTTGTTTCTTGATGAACCTACAAGTGGCCTAGACAGTGCCTCAGCTTTCTTCGTTATACAAACACTTAGAAATGTTGCTCGCGATGGAAGAACTATTATCTCCTCAATTCACCAACCAAGTAGTGAAGTTTTCGACCTCTTTGATGACCTTTTCTTACTCTCTGGTGGTGAAACAATCTACTTTGGAGAAGCAAAAAAGGCTTTAGAGTTCTTTGCCGAAGCGGGCTTTCCATGCCCAAGCAGAAGAAGTCCTTCTGATCACTTCCTTCGTTGTATCAATTCAGACTTCGACATTGTAACAGCCACCCTCAAAGGATCTCAAAGACTTCGTCAATCATCAAATTCTGTCATGGAATTGGCAACAGCAGAGATCAAAGCAATTCTTGCAGATAAGTACAGGGGCTCAAAGTATCAAAGACGGGCAGGGGAGAGGATTCGGGAAATATCAACTTCTGAAGGACTTGTGCCTGGATCACAAAGTGGGAGCCAAGCGAGTTGGTGGAAGCAACTTGTCACATTGACACGGCGATCTTTTCTGAACATGTCTAGGGACGTTGGATATTACTGGCTGAGGTTAATGATCTACATAGTAGTGTCAATTTGTGTGGGTACTATCTATTTTGATGTTGGCACTAGCTATACTGCAATCTTGGCTCGGTGTGCTTGTGGTGGATTCATATCAGGCTTCATGACCTTCATGTCCATTGGAGCCTTCCCGTCCTTTGTCGAAGAAATGAAGGTCTTCTATAGAGAAAGGCTTAATGGGCATTATGGAGTTGCTGTGTTTATACTATCAAACTTCTTGTCTTCATTCCCATACTTGGTGGCAATTTCAGTGGCTACAGGGACTATTACATTTTACATGGTGAAGTTTCGGTCTGAATTTTCTCATTATGTGTTCTTCTGCCTCAATCTTTTTAGTTGCATTGCTGTTGTTGAGAGCTGCATGATGGTTGTGGCTTCATTAGTCCCAAATTTCTTGATGGGAATCATAACTGGGGCTGGACTTATTGGAATCATGATGATGACTTCGGGATTCTTCCGTTTGTTGTCTGATCTTCCCAAGCCTTTTTGGCGCTATCCTGTTTCATATATCAGTTATGGGGCATGGGGACTACAGGGAGCATACAAGAATGACTTGATTGGGCTGGAGTTTGAACCTCTTATATCTGGTGACCCCAAACTGAAGGGTTCAGAAATCATCACAAACATGCTCGGAATTCAACTGGATCATTCCAAGTGGTGGGACTTGACTGCTTTATTTATCATTCTCATATCTTACAGACTCATCTTCTTCCTCATCCTCAAGTTCAAGGAAAGAGCCTGGCCATACTTTCAGACACTTCACAGCAACAGAACTCTGCAGCAACTTAATCGCAGGCCTTCATTCCATACCAAGCCTTCATTTCCTTCAAAAAGACACCAGGCCCTCCATTCACTGTCTTCTCAAGAGGGTCTCAGCTCCCCAATCGCCTAG 2067 0.448 MGRGIEMASGGSDGVEVEDGWSRGRAHEGGTYLVWEDLTVVLPNFGKGPTKRLLQGLTGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRNVIMTGNVLLNGRKRRLDCGFVAYVTQEDVLLGTLTVRETITYSAHLRLPTSMTKEEINGIVDGTIMEMGLQDCSDRLIGNWHLRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVIQTLRNVARDGRTIISSIHQPSSEVFDLFDDLFLLSGGETIYFGEAKKALEFFAEAGFPCPSRRSPSDHFLRCINSDFDIVTATLKGSQRLRQSSNSVMELATAEIKAILADKYRGSKYQRRAGERIREISTSEGLVPGSQSGSQASWWKQLVTLTRRSFLNMSRDVGYYWLRLMIYIVVSICVGTIYFDVGTSYTAILARCACGGFISGFMTFMSIGAFPSFVEEMKVFYRERLNGHYGVAVFILSNFLSSFPYLVAISVATGTITFYMVKFRSEFSHYVFFCLNLFSCIAVVESCMMVVASLVPNFLMGIITGAGLIGIMMMTSGFFRLLSDLPKPFWRYPVSYISYGAWGLQGAYKNDLIGLEFEPLISGDPKLKGSEIITNMLGIQLDHSKWWDLTALFIILISYRLIFFLILKFKERAWPYFQTLHSNRTLQQLNRRPSFHTKPSFPSKRHQALHSLSSQEGLSSPIA* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1222 688 Pfam ABC-2 type transporter 366 575 IPR013525 GO:0016020|GO:0140359
Vvi6g1222 688 MobiDBLite consensus disorder prediction 1 22 - -
Vvi6g1222 688 Pfam ABC transporter 55 205 IPR003439 GO:0005524
Vvi6g1222 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 269 IPR027417 -
Vvi6g1222 688 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 277 IPR003439 GO:0005524
Vvi6g1222 688 SMART AAA_5 63 234 IPR003593 GO:0016887
Vvi6g1222 688 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Vvi6g1222 688 Pfam ABC-2 type transporter 234 290 IPR043926 GO:0140359
Vvi6g1222 688 Gene3D - 23 272 IPR027417 -
Vvi6g1222 688 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 26 657 - -
Vvi6g1222 688 FunFam ABC transporter G family member 11 27 271 - -
Vvi6g1222 688 CDD ABCG_EPDR 30 259 - -
Vvi6g1222 688 MobiDBLite consensus disorder prediction 660 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g1222 Vvi-Chr6 17493191 17498316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g1222 49 246 Calmodulin-binding Proteins AT2G36910 30.622 2.05e-11 65.9